SharedObject 1.0.0
Jiefei Wang
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/SharedObject |
| Branch: RELEASE_3_10 |
| Last Commit: 5a594e2 |
| Last Changed Date: 2019-10-29 13:12:02 -0400 (Tue, 29 Oct 2019) |
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | ERROR | skipped | | |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  |
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL SharedObject
###
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘SharedObject’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I"/home/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c C_interface.cpp -o C_interface.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I"/home/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I"/home/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c altrepRegistration.cpp -o altrepRegistration.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I"/home/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c memoryManager.cpp -o memoryManager.o
In file included from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from /usr/include/c++/7/memory:80:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:23,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/sync/scoped_lock.hpp:35,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/detail/allocator_common.hpp:32,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/allocators/allocator.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/segment_manager.hpp:38,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/detail/managed_memory_impl.hpp:30,
from /home/biocbuild/bbs-3.10-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:25,
from memoryManager.cpp:36:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I"/home/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c tools.cpp -o tools.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o SharedObject.so C_interface.o RcppExports.o altrepRegistration.o memoryManager.o tools.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-SharedObject/00new/SharedObject/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SharedObject)