Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:18:06 -0400 (Wed, 15 Apr 2020).
Package 1618/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SMAP 1.50.0 Robin Andersson
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: SMAP |
Version: 1.50.0 |
Command: rm -rf SMAP.buildbin-libdir && mkdir SMAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SMAP.buildbin-libdir SMAP_1.50.0.tar.gz |
StartedAt: 2020-04-15 09:43:11 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 09:43:38 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 27.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: SMAP_1.50.0.zip |
PackageFileSize: 1.344 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SMAP.buildbin-libdir && mkdir SMAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SMAP.buildbin-libdir SMAP_1.50.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'SMAP' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c gradient.c -o gradient.o gradient.c: In function 'prior_gradient': gradient.c:142:7: warning: variable 'lower' set but not used [-Wunused-but-set-variable] int lower; ^ gradient.c: In function 'hmm_update': gradient.c:247:10: warning: unused variable 'tmp' [-Wunused-variable] double tmp; ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c overlap.c -o overlap.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c prob.c -o prob.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c viterbi.c -o viterbi.o C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SMAP.dll tmp.def gradient.o init.o overlap.o prob.o viterbi.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/SMAP.buildbin-libdir/00LOCK-SMAP/00new/SMAP/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SMAP' finding HTML links ... done GBM html SMAP-internal html SMAPHMM-class html SMAPHMM html SMAPObservations-class html SMAPObservations html SMAPProfile-class html SMAPProfiles-class html smap html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SMAP' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c gradient.c -o gradient.o gradient.c: In function 'prior_gradient': gradient.c:142:7: warning: variable 'lower' set but not used [-Wunused-but-set-variable] int lower; ^ gradient.c: In function 'hmm_update': gradient.c:247:10: warning: unused variable 'tmp' [-Wunused-variable] double tmp; ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c overlap.c -o overlap.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c prob.c -o prob.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c viterbi.c -o viterbi.o C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SMAP.dll tmp.def gradient.o init.o overlap.o prob.o viterbi.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/SMAP.buildbin-libdir/SMAP/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'SMAP' as SMAP_1.50.0.zip * DONE (SMAP)