Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:25:01 -0400 (Wed, 15 Apr 2020).
Package 1490/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RTCGAToolbox 2.16.3 Marcel Ramos
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: RTCGAToolbox |
Version: 2.16.3 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/RTCGAToolbox_2.16.3.tar.gz && rm -rf RTCGAToolbox.buildbin-libdir && mkdir RTCGAToolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGAToolbox.buildbin-libdir RTCGAToolbox_2.16.3.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL RTCGAToolbox_2.16.3.zip && rm RTCGAToolbox_2.16.3.tar.gz RTCGAToolbox_2.16.3.zip |
StartedAt: 2020-04-14 20:29:01 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 20:29:51 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 49.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/RTCGAToolbox_2.16.3.tar.gz && rm -rf RTCGAToolbox.buildbin-libdir && mkdir RTCGAToolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGAToolbox.buildbin-libdir RTCGAToolbox_2.16.3.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL RTCGAToolbox_2.16.3.zip && rm RTCGAToolbox_2.16.3.tar.gz RTCGAToolbox_2.16.3.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2540k 100 2540k 0 0 12.8M 0 --:--:-- --:--:-- --:--:-- 13.1M install for i386 * installing *source* package 'RTCGAToolbox' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RTCGAToolbox' finding HTML links ... done CorResult-class html DGEResult-class html FirehoseCGHArray-class html FirehoseData-class html FirehoseGISTIC-class html FirehoseMethylationArray-class html FirehosemRNAArray-class html RTCGASample html RTCGAToolbox html biocExtract html finding level-2 HTML links ... done Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpEBkIa2/R.INSTALL2bc07f5825bc/RTCGAToolbox/man/biocExtract.Rd:32: file link 'RaggedExperiment' in package 'RaggedExperiment' does not exist and so has been treated as a topic getBroadSubtypes html getCNGECorrelation html getData html getDiffExpressedGenes html getFirehoseAnalyzeDates html getFirehoseData html getFirehoseDatasets html getFirehoseRunningDates html getGISTICPeaks html getMutationRate html getReport html getSurvival html hg19.ucsc.gene.locations html selectType html showResults-CorResult html showResults-DGEResult html showResults html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'RTCGAToolbox' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'RTCGAToolbox' as RTCGAToolbox_2.16.3.zip * DONE (RTCGAToolbox) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'RTCGAToolbox' successfully unpacked and MD5 sums checked