Bora Uyar
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/RCAS |
| Branch: RELEASE_3_10 |
| Last Commit: 8b40ab4 |
| Last Changed Date: 2019-10-29 13:09:55 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:26:59 -0400 (Wed, 15 Apr 2020).
| Package 1379/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RCAS 1.12.0 Bora Uyar
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: RCAS |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/RCAS_1.12.0.tar.gz && rm -rf RCAS.buildbin-libdir && mkdir RCAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCAS.buildbin-libdir RCAS_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL RCAS_1.12.0.zip && rm RCAS_1.12.0.tar.gz RCAS_1.12.0.zip |
| StartedAt: 2020-04-14 19:59:11 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:00:26 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 74.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/RCAS_1.12.0.tar.gz && rm -rf RCAS.buildbin-libdir && mkdir RCAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCAS.buildbin-libdir RCAS_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL RCAS_1.12.0.zip && rm RCAS_1.12.0.tar.gz RCAS_1.12.0.zip
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install for i386
* installing *source* package 'RCAS' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
converting help for package 'RCAS'
finding HTML links ... done
calculateCoverageProfile html
calculateCoverageProfileFromTxdb html
calculateCoverageProfileList html
calculateCoverageProfileListFromTxdb html
createControlRegions html
createDB html
createOrthologousGeneSetList html
deleteSampleDataFromDB html
discoverFeatureSpecificMotifs html
extractSequences html
geneSets html
getFeatureBoundaryCoverage html
getFeatureBoundaryCoverageBin html
getFeatureBoundaryCoverageMulti html
getIntervalOverlapMatrix html
getMotifSummaryTable html
getTargetedGenesTable html
getTxdbFeatures html
getTxdbFeaturesFromGRanges html
gff html
importBed html
importBedFiles html
importGtf html
parseMsigdb html
plotFeatureBoundaryCoverage html
printMsigdbDataset html
queryGff html
queryRegions html
retrieveOrthologs html
runGSEA html
runMotifRG html
runReport html
runReportMetaAnalysis html
runTopGO html
summarizeDatabaseContent html
summarizeQueryRegions html
summarizeQueryRegionsMulti html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RCAS' ...
** testing if installed package can be loaded
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'RCAS' as RCAS_1.12.0.zip
* DONE (RCAS)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'RCAS' successfully unpacked and MD5 sums checked