Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:33:53 -0400 (Wed, 15 Apr 2020).
Package 1371/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RBGL 1.62.1 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | OK | OK |
Package: RBGL |
Version: 1.62.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RBGL |
StartedAt: 2020-04-14 18:49:14 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 18:51:32 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 138.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RBGL ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘RBGL’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c bbc.cpp -o bbc.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c cliques.cpp -o cliques.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c clusteringCoef.cpp -o clusteringCoef.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dominatorTree.cpp -o dominatorTree.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o In file included from edmonds_optimum_branching.cpp:3: In file included from ./edmonds_optimum_branching.hpp:94: ./edmonds_optimum_branching_impl.hpp:520:71: warning: unused typedef 'EdgeIter' [-Wunused-local-typedef] typedef typename graph_traits<TEdgeListGraph>::edge_iterator EdgeIter; ^ ./edmonds_optimum_branching_impl.hpp:521:71: warning: unused typedef 'weight_t' [-Wunused-local-typedef] typedef typename property_traits<TWeightMap>::value_type weight_t; ^ 2 warnings generated. clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c hcs.cpp -o hcs.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c incrConnComp.cpp -o incrConnComp.o incrConnComp.cpp:74:32: warning: unused variable 'child_index' [-Wunused-variable] BOOST_FOREACH(VertexIndex child_index, components[current_index]) { ^ 1 warning generated. clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c interfaces.cpp -o interfaces.o interfaces.cpp:57:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:61:62: warning: unused typedef 'Color' [-Wunused-local-typedef] typedef property_map<Graph_dd, vertex_color_t>::type Color; ^ interfaces.cpp:98:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:99:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:143:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:142:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:198:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:199:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:226:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:225:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:252:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:253:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:295:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:320:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:360:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:361:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ 16 warnings generated. clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c minST.cpp -o minST.o minST.cpp:14:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ minST.cpp:48:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ minST.cpp:81:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ 3 warnings generated. clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c mincut.cpp -o mincut.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ordering.cpp -o ordering.o ordering.cpp:182:48: warning: unused variable 'id' [-Wunused-variable] property_map<Graph_dd, vertex_index_t>::type id = get(vertex_index, g); ^ ordering.cpp:133:53: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits<Graph_dd>::vertex_descriptor Vertex; ^ ordering.cpp:176:53: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits<Graph_dd>::vertex_descriptor Vertex; ^ ordering.cpp:232:47: warning: unused typedef 'Pair' [-Wunused-local-typedef] typedef std::pair<std::size_t, std::size_t> Pair; ^ 4 warnings generated. clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c planar.cpp -o planar.o planar.cpp:225:34: warning: unused variable 'oi_end' [-Wunused-variable] Vertex_Vec_t::iterator oi, oi_end = ordering.end(); ^ planar.cpp:429:36: warning: unused variable 'ki_end' [-Wunused-variable] Edge_Vec_t::iterator ki, ki_end = kuratowski_edges.end(); ^ planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable] int i, j = 0; ^ 3 warnings generated. clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c registerSigHandlers.cpp -o registerSigHandlers.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c shortestPath.cpp -o shortestPath.o shortestPath.cpp:17:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ shortestPath.cpp:136:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ shortestPath.cpp:177:81: warning: unused typedef 'Graph' [-Wunused-local-typedef] property< edge_weight_t, double, property< edge_weight2_t, double > > > Graph; ^ shortestPath.cpp:180:39: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef std::pair < int, int >Edge; ^ 4 warnings generated. clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c sna.cpp -o sna.o sna.cpp:161:9: warning: unused variable 'res_cap' [-Wunused-variable] res_cap = get(edge_residual_capacity, flow_g); ^ 1 warning generated. clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c transitive_closure.cpp -o transitive_closure.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c wavefront.cpp -o wavefront.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-RBGL/00new/RBGL/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘RBGL.Rnw’ ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RBGL)