Laurent Gatto
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/Pbase |
| Branch: RELEASE_3_10 |
| Last Commit: fffa65a |
| Last Changed Date: 2019-10-29 13:09:00 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:23:11 -0400 (Wed, 15 Apr 2020).
| Package 1233/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Laurent Gatto
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK |
| Package: Pbase |
| Version: 0.26.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/Pbase_0.26.0.tar.gz && rm -rf Pbase.buildbin-libdir && mkdir Pbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pbase.buildbin-libdir Pbase_0.26.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL Pbase_0.26.0.zip && rm Pbase_0.26.0.tar.gz Pbase_0.26.0.zip |
| StartedAt: 2020-04-14 20:22:25 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:24:01 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 96.6 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/Pbase_0.26.0.tar.gz && rm -rf Pbase.buildbin-libdir && mkdir Pbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pbase.buildbin-libdir Pbase_0.26.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL Pbase_0.26.0.zip && rm Pbase_0.26.0.tar.gz Pbase_0.26.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3705k 100 3705k 0 0 27.2M 0 --:--:-- --:--:-- --:--:-- 28.0M
install for i386
* installing *source* package 'Pbase' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Pbase'
finding HTML links ... done
Pparams-class html
Proteins-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpcD4MKv/R.INSTALL26d83a3d75ef/Pbase/man/Proteins-class.Rd:121: file link 'proteins' in package 'ensembldb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpcD4MKv/R.INSTALL26d83a3d75ef/Pbase/man/Proteins-class.Rd:126: file link 'listColumns' in package 'ensembldb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpcD4MKv/R.INSTALL26d83a3d75ef/Pbase/man/Proteins-class.Rd:232: file link 'cleave' in package 'cleaver' does not exist and so has been treated as a topic
calculateHeavyLabels html
etrid2grl html
isReverse html
p html
plotAsAnnotationTrack html
proteinCoding-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'Pbase' is deprecated and will be removed from Bioconductor
version 3.11
** testing if installed package can be loaded from final location
Warning: Package 'Pbase' is deprecated and will be removed from Bioconductor
version 3.11
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Pbase' ...
** testing if installed package can be loaded
Warning: Package 'Pbase' is deprecated and will be removed from Bioconductor
version 3.11
* MD5 sums
packaged installation of 'Pbase' as Pbase_0.26.0.zip
* DONE (Pbase)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'Pbase' successfully unpacked and MD5 sums checked