Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:09:59 -0400 (Wed, 15 Apr 2020).
Package 1131/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
NanoStringQCPro 1.18.0 Robert Ziman
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: NanoStringQCPro |
Version: 1.18.0 |
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:NanoStringQCPro.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings NanoStringQCPro_1.18.0.tar.gz |
StartedAt: 2020-04-15 02:58:02 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 03:00:10 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 127.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: NanoStringQCPro.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:NanoStringQCPro.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings NanoStringQCPro_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/NanoStringQCPro.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘NanoStringQCPro/DESCRIPTION’ ... OK * this is package ‘NanoStringQCPro’ version ‘1.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NanoStringQCPro’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘knitr’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE centeredSampleClustering: no visible global function definition for ‘png’ centeredSampleClustering: no visible global function definition for ‘dev.off’ countsInBlankSamples_verticalPlot: no visible global function definition for ‘png’ countsInBlankSamples_verticalPlot: no visible global function definition for ‘dev.off’ geneClustering: no visible global function definition for ‘png’ geneClustering: no visible global function definition for ‘dev.off’ negCtrlsByLane_verticalPlot: no visible global function definition for ‘png’ negCtrlsByLane_verticalPlot: no visible global function definition for ‘dev.off’ previewPNG: no visible global function definition for ‘png’ previewPNG: no visible global function definition for ‘dev.off’ sampleClustering,RccSet: no visible global function definition for ‘png’ sampleClustering,RccSet: no visible global function definition for ‘dev.off’ Undefined global functions or variables: dev.off png Consider adding importFrom("grDevices", "dev.off", "png") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed makeQCReport 13.372 0.284 13.737 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.10-bioc/meat/NanoStringQCPro.Rcheck/00check.log’ for details.
NanoStringQCPro.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL NanoStringQCPro ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘NanoStringQCPro’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NanoStringQCPro)
NanoStringQCPro.Rcheck/NanoStringQCPro-Ex.timings
name | user | system | elapsed | |
RccSet-class | 0.596 | 0.004 | 0.599 | |
addCodesetAnnotation | 0.320 | 0.000 | 0.591 | |
buildCodesetAnnotation | 0.012 | 0.000 | 0.018 | |
checkRccSet | 0.092 | 0.000 | 0.091 | |
contentNorm | 0.156 | 0.000 | 0.157 | |
copyRccSet | 0.020 | 0.000 | 0.017 | |
getBackground | 0.104 | 0.000 | 0.103 | |
getBlankLabel | 0.000 | 0.000 | 0.002 | |
makeQCReport | 13.372 | 0.284 | 13.737 | |
newRccSet | 0.364 | 0.000 | 0.368 | |
posCtrlNorm | 0.024 | 0.000 | 0.025 | |
preprocRccSet | 0.188 | 0.000 | 0.188 | |
presAbsCall | 0.064 | 0.000 | 0.064 | |
readCdrDesignData | 0.004 | 0.000 | 0.003 | |
readRcc | 0.008 | 0.000 | 0.005 | |
readRlf | 0.004 | 0.000 | 0.006 | |
subtractBackground | 0.092 | 0.000 | 0.095 | |