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BUILD report for MANOR on merida1

This page was generated on 2020-04-15 12:34:32 -0400 (Wed, 15 Apr 2020).

Package 947/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MANOR 1.58.0
Pierre Neuvial
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/MANOR
Branch: RELEASE_3_10
Last Commit: 483c3fa
Last Changed Date: 2019-10-29 13:07:37 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: MANOR
Version: 1.58.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MANOR
StartedAt: 2020-04-14 19:52:39 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:53:36 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 57.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MANOR
###
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* checking for file ‘MANOR/DESCRIPTION’ ... OK
* preparing ‘MANOR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MANOR.Rnw’ using Sweave
Loading required package: MANOR
Loading required package: GLAD

######################################################################################

Have fun with GLAD

For smoothing it is possible to use either
the AWS algorithm (Polzehl and Spokoiny, 2002,
or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics,  2008,

If you use the package with AWS, please cite:
Hupe et al. (Bioinformatics, 2004, and Polzehl and Spokoiny (2002,

If you use the package with HaarSeg, please cite:
Hupe et al. (Bioinformatics, 2004, and (Ben-Yaacov and Eldar, Bioinformatics, 2008,

For fast computation it is recommanded to use
the daglad function with smoothfunc=haarseg

######################################################################################

New options are available in daglad: see help for details.


Attaching package: ‘MANOR’

The following object is masked from ‘package:base’:

    norm

Error: processing vignette 'MANOR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'MANOR.tex' failed.
LaTeX errors:
! Package inputenc Error: Invalid UTF-8 byte sequence.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Package inputenc Error: Invalid UTF-8 byte sequence.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Package inputenc Error: Invalid UTF-8 byte sequence.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
--- failed re-building ‘MANOR.Rnw’

SUMMARY: processing the following file failed:
  ‘MANOR.Rnw’

Error: Vignette re-building failed.
Execution halted