Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:28:52 -0400 (Wed, 15 Apr 2020).
Package 931/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
M3C 1.8.0 Christopher John
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: M3C |
Version: 1.8.0 |
Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:M3C.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings M3C_1.8.0.tar.gz |
StartedAt: 2020-04-15 04:23:24 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 04:28:31 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 306.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: M3C.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:M3C.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings M3C_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/M3C.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'M3C/DESCRIPTION' ... OK * this is package 'M3C' version '1.8.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'M3C' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CDF: no visible binding for global variable 'consensusindex' CDF: no visible binding for global variable 'k' CDF: no visible binding for global variable 'K' CDF: no visible binding for global variable 'PAC_SCORE' M3C: no visible binding for global variable 'i' M3C: no visible binding for global variable 'K' M3C: no visible binding for global variable 'RCSI' M3C: no visible binding for global variable 'P_SCORE' clustersim: no visible binding for global variable 'X3' clustersim: no visible binding for global variable 'PC1' clustersim: no visible binding for global variable 'PC2' pca: no visible binding for global variable 'label' tsne: no visible binding for global variable 'X1' tsne: no visible binding for global variable 'X2' tsne: no visible binding for global variable 'label' umap: no visible binding for global variable 'X1' umap: no visible binding for global variable 'X2' umap: no visible binding for global variable 'label' Undefined global functions or variables: K PAC_SCORE PC1 PC2 P_SCORE RCSI X1 X2 X3 consensusindex i k label * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed clustersim 4.68 0.12 5.31 M3C 2.56 0.18 83.20 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed M3C 1.65 0.11 106 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/M3C.Rcheck/00check.log' for details.
M3C.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/M3C_1.8.0.tar.gz && rm -rf M3C.buildbin-libdir && mkdir M3C.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=M3C.buildbin-libdir M3C_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL M3C_1.8.0.zip && rm M3C_1.8.0.tar.gz M3C_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 6243k 100 6243k 0 0 34.6M 0 --:--:-- --:--:-- --:--:-- 35.4M install for i386 * installing *source* package 'M3C' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'M3C' finding HTML links ... done M3C html clustersim html desx html featurefilter html mydata html pca html tsne html umap html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'M3C' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'M3C' as M3C_1.8.0.zip * DONE (M3C) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'M3C' successfully unpacked and MD5 sums checked
M3C.Rcheck/examples_i386/M3C-Ex.timings
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M3C.Rcheck/examples_x64/M3C-Ex.timings
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