Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:31:19 -0400 (Wed, 15 Apr 2020).
Package 783/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
HiCBricks 1.4.0 Koustav Pal
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: HiCBricks |
Version: 1.4.0 |
Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings HiCBricks_1.4.0.tar.gz |
StartedAt: 2020-04-15 03:52:23 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 04:00:34 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 490.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings HiCBricks_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/HiCBricks.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'HiCBricks/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HiCBricks' version '1.4.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'HiCBricks' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed Brick_export_to_sparse 2.44 0.45 8.35 Brick_fetch_row_vector 1.79 0.59 9.85 BrickContainer_unlink_resolution 1.64 0.30 12.25 Brick_get_matrix_within_coords 1.50 0.41 13.35 Brick_call_compartments 1.28 0.38 10.19 Brick_matrix_dimensions 1.26 0.40 7.00 Brick_matrix_maxdist 1.11 0.53 5.13 Brick_get_entire_matrix 1.18 0.36 5.57 Brick_matrix_exists 1.18 0.32 8.99 Brick_get_vector_values 1.10 0.39 8.42 Brick_get_matrix_mcols 0.86 0.39 21.01 Create_many_Bricks 0.95 0.23 9.92 Brick_get_bintable 0.64 0.18 7.93 Brick_list_rangekeys 0.66 0.12 5.03 Brick_get_ranges 0.60 0.09 5.79 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed Brick_export_to_sparse 3.21 0.51 5.61 Brick_call_compartments 1.61 0.52 10.65 BrickContainer_unlink_resolution 1.67 0.26 5.06 Brick_add_ranges 1.50 0.22 7.74 BrickContainer_change_experiment_name 0.98 0.14 11.91 BrickContainer_list_resolutions 0.81 0.08 6.33 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/HiCBricks_1.4.0.tar.gz && rm -rf HiCBricks.buildbin-libdir && mkdir HiCBricks.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCBricks.buildbin-libdir HiCBricks_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL HiCBricks_1.4.0.zip && rm HiCBricks_1.4.0.tar.gz HiCBricks_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2313k 100 2313k 0 0 30.1M 0 --:--:-- --:--:-- --:--:-- 31.8M install for i386 * installing *source* package 'HiCBricks' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'HiCBricks' finding HTML links ... done BrickContainer_change_experiment_name html BrickContainer_change_output_directory html BrickContainer_get_path_to_file html BrickContainer_list_chromosomes html BrickContainer_list_experiment_name html BrickContainer_list_files html BrickContainer_list_output_directory html BrickContainer_list_resolutions html BrickContainer_unlink_resolution html Brick_add_ranges html Brick_call_compartments html Brick_export_to_sparse html Brick_fetch_range_index html Brick_fetch_row_vector html Brick_get_bintable html Brick_get_chrominfo html Brick_get_entire_matrix html Brick_get_matrix html Brick_get_matrix_mcols html Brick_get_matrix_within_coords html Brick_get_ranges html Brick_get_values_by_distance html Brick_get_vector_values html Brick_list_matrices html Brick_list_matrix_mcols html Brick_list_mcool_normalisations html Brick_list_mcool_resolutions html Brick_list_rangekeys html Brick_list_ranges_mcols html Brick_load_cis_matrix_till_distance html Brick_load_data_from_mcool html Brick_load_matrix html Brick_local_score_differentiator html Brick_make_ranges html Brick_matrix_dimensions html Brick_matrix_exists html Brick_matrix_filename html Brick_matrix_isdone html Brick_matrix_issparse html Brick_matrix_maxdist html Brick_matrix_minmax html Brick_mcool_normalisation_exists html Brick_rangekey_exists html Brick_return_region_position html Brick_vizart_plot_heatmap html Create_many_Bricks html Create_many_Bricks_from_mcool html HiCBricks html load_BrickContainer html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'HiCBricks' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'HiCBricks' as HiCBricks_1.4.0.zip * DONE (HiCBricks) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'HiCBricks' successfully unpacked and MD5 sums checked
HiCBricks.Rcheck/examples_i386/HiCBricks-Ex.timings
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HiCBricks.Rcheck/examples_x64/HiCBricks-Ex.timings
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