Georg Stricker
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/GenoGAM |
| Branch: RELEASE_3_10 |
| Last Commit: 6753a93 |
| Last Changed Date: 2019-10-29 13:09:36 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:26:27 -0400 (Wed, 15 Apr 2020).
| Package 673/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenoGAM 2.4.0 Georg Stricker
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: GenoGAM |
| Version: 2.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GenoGAM_2.4.0.tar.gz && rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GenoGAM_2.4.0.zip && rm GenoGAM_2.4.0.tar.gz GenoGAM_2.4.0.zip |
| StartedAt: 2020-04-14 19:40:29 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:42:22 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 113.1 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GenoGAM_2.4.0.tar.gz && rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GenoGAM_2.4.0.zip && rm GenoGAM_2.4.0.tar.gz GenoGAM_2.4.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3286k 100 3286k 0 0 50.0M 0 --:--:-- --:--:-- --:--:-- 53.4M
install for i386
* installing *source* package 'GenoGAM' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=core2 -c matrixMult.cpp -o matrixMult.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GenoGAM.dll tmp.def RcppExports.o matrixMult.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/GenoGAM.buildbin-libdir/00LOCK-GenoGAM/00new/GenoGAM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'S4Vectors::na.omit' by 'stats::na.omit' when loading 'GenoGAM'
** help
*** installing help indices
converting help for package 'GenoGAM'
finding HTML links ... done
Coordinates-class html
GenoGAM-class html
GenoGAM html
GenoGAMDataSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpYfVVmO/R.INSTALL20ec78525f48/GenoGAM/man/GenoGAMDataSet-class.Rd:139: file link 'GenoGAMSettings' in package 'GenoGAM' does not exist and so has been treated as a topic
GenoGAMDataSet-metrics html
GenoGAMDataSet-subsetting html
GenoGAMDataSetList-class html
GenoGAMDataSetList-metrics html
GenoGAMDataSetList-subsetting html
GenoGAMFamily-class html
GenoGAMList-class html
GenoGAMList-subsetting html
GenoGAMSettings-class html
asCoordinates html
callPeaks html
computeRegionSignificance html
computeSignificance html
computeSizeFactors html
fitGenoGAM html
makeTestGenoGAM html
makeTestGenoGAMDataSet html
makeTestGenoGAMDataSetList html
makeTestGenoGAMList html
plotGenoGAM html
readData html
writeToBEDFile html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'S4Vectors::na.omit' by 'stats::na.omit' when loading 'GenoGAM'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'S4Vectors::na.omit' by 'stats::na.omit' when loading 'GenoGAM'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenoGAM' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=core2 -c matrixMult.cpp -o matrixMult.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GenoGAM.dll tmp.def RcppExports.o matrixMult.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/GenoGAM.buildbin-libdir/GenoGAM/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'S4Vectors::na.omit' by 'stats::na.omit' when loading 'GenoGAM'
* MD5 sums
packaged installation of 'GenoGAM' as GenoGAM_2.4.0.zip
* DONE (GenoGAM)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'GenoGAM' successfully unpacked and MD5 sums checked