Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:08:25 -0400 (Wed, 15 Apr 2020).
Package 301/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Clomial 1.22.0 Habil Zare
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: Clomial |
Version: 1.22.0 |
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:Clomial.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings Clomial_1.22.0.tar.gz |
StartedAt: 2020-04-15 02:04:03 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 02:07:18 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 195.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Clomial.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:Clomial.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings Clomial_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/Clomial.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Clomial/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Clomial’ version ‘1.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Clomial’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Clomial: no visible global function definition for ‘runif’ Clomial.generate.data: no visible global function definition for ‘runif’ Clomial.generate.data: no visible global function definition for ‘rbinom’ Clomial.likelihood: no visible global function definition for ‘dbinom’ Phi: no visible global function definition for ‘dbinom’ choose.best: no visible global function definition for ‘tail’ compute.P.reparam : update.Wj: no visible global function definition for ‘optim’ compute.P.reparam : plot.obj: no visible global function definition for ‘plot’ compute.q: no visible global function definition for ‘dbinom’ Undefined global functions or variables: dbinom optim plot rbinom runif tail Consider adding importFrom("graphics", "plot") importFrom("stats", "dbinom", "optim", "rbinom", "runif") importFrom("utils", "tail") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed choose.best 62.540 2.444 65.174 Clomial-package 24.708 0.924 25.774 Clomial 22.664 0.860 23.569 compute.bic 12.484 0.500 12.996 Clomial.likelihood 12.028 0.376 12.469 Clomial.iterate 10.820 0.432 11.305 compute.errors 5.824 0.192 6.024 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.10-bioc/meat/Clomial.Rcheck/00check.log’ for details.
Clomial.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL Clomial ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘Clomial’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Clomial)
Clomial.Rcheck/Clomial-Ex.timings
name | user | system | elapsed | |
Clomial-package | 24.708 | 0.924 | 25.774 | |
Clomial | 22.664 | 0.860 | 23.569 | |
Clomial.generate.data | 0.064 | 0.000 | 0.066 | |
Clomial.iterate | 10.820 | 0.432 | 11.305 | |
Clomial.likelihood | 12.028 | 0.376 | 12.469 | |
Clomial1000 | 0.348 | 0.008 | 0.358 | |
breastCancer | 0.004 | 0.000 | 0.002 | |
choose.best | 62.540 | 2.444 | 65.174 | |
compute.bic | 12.484 | 0.500 | 12.996 | |
compute.errors | 5.824 | 0.192 | 6.024 | |