Package: CNTools

Version: 1.42.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CNTools_1.42.0.tar.gz && rm -rf CNTools.buildbin-libdir && mkdir CNTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNTools.buildbin-libdir CNTools_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CNTools_1.42.0.zip && rm CNTools_1.42.0.tar.gz CNTools_1.42.0.zip

StartedAt: 2020-04-14 19:24:30 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 19:25:13 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 42.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CNTools_1.42.0.tar.gz && rm -rf CNTools.buildbin-libdir && mkdir CNTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNTools.buildbin-libdir CNTools_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CNTools_1.42.0.zip && rm CNTools_1.42.0.tar.gz CNTools_1.42.0.zip
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install for i386

* installing *source* package 'CNTools' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c getratios.c -o getratios.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CNTools.dll tmp.def getratios.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CNTools.buildbin-libdir/00LOCK-CNTools/00new/CNTools/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'start' in package 'CNTools'
Creating a new generic function for 'end' in package 'CNTools'
Creating a generic function for 'genefilter' from package 'genefilter' in package 'CNTools'
** help
*** installing help indices
  converting help for package 'CNTools'
    finding HTML links ... done
    CNSeg-class                             html  
    RS-class                                html  
    cor-methods                             html  
    diffBy-methods                          html  
    dist-methods                            html  
    genefilter-methods                      html  
    getRS-methods                           html  
    madFilter-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CNTools' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c getratios.c -o getratios.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CNTools.dll tmp.def getratios.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CNTools.buildbin-libdir/CNTools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNTools' as CNTools_1.42.0.zip
* DONE (CNTools)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'CNTools' successfully unpacked and MD5 sums checked