Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:31:51 -0400 (Wed, 15 Apr 2020).
Package 159/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BiocSingular 1.2.2 Aaron Lun
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: BiocSingular |
Version: 1.2.2 |
Command: rm -rf BiocSingular.buildbin-libdir && mkdir BiocSingular.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocSingular.buildbin-libdir BiocSingular_1.2.2.tar.gz |
StartedAt: 2020-04-15 08:17:00 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 08:18:16 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 75.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: BiocSingular_1.2.2.zip |
PackageFileSize: 1.519 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BiocSingular.buildbin-libdir && mkdir BiocSingular.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocSingular.buildbin-libdir BiocSingular_1.2.2.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'BiocSingular' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c compute_scale.cpp -o compute_scale.o compute_scale.cpp: In instantiation of 'Rcpp::NumericVector compute_scale_internal(Rcpp::RObject, Rcpp::RObject) [with M = beachmat::lin_matrix<int, Rcpp::Vector<13> >; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': compute_scale.cpp:60:79: required from here compute_scale.cpp:21:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (numeric_centers.size()!=ncols) { ^ compute_scale.cpp: In instantiation of 'Rcpp::NumericVector compute_scale_internal(Rcpp::RObject, Rcpp::RObject) [with M = beachmat::lin_matrix<double, Rcpp::Vector<14, Rcpp::PreserveStorage> >; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': compute_scale.cpp:62:79: required from here compute_scale.cpp:21:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocSingular.dll tmp.def RcppExports.o compute_scale.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BiocSingular.buildbin-libdir/00LOCK-BiocSingular/00new/BiocSingular/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BiocSingular' finding HTML links ... done BiocSingularParam html finding level-2 HTML links ... done DeferredMatrix html LowRankMatrix html ResidualMatrix html options html runExactSVD html runIrlbaSVD html runPCA html runRandomSVD html runSVD html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BiocSingular' ... ** libs C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/beachmat/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c compute_scale.cpp -o compute_scale.o compute_scale.cpp: In instantiation of 'Rcpp::NumericVector compute_scale_internal(Rcpp::RObject, Rcpp::RObject) [with M = beachmat::lin_matrix<int, Rcpp::Vector<13> >; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': compute_scale.cpp:60:79: required from here compute_scale.cpp:21:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (numeric_centers.size()!=ncols) { ^ compute_scale.cpp: In instantiation of 'Rcpp::NumericVector compute_scale_internal(Rcpp::RObject, Rcpp::RObject) [with M = beachmat::lin_matrix<double, Rcpp::Vector<14, Rcpp::PreserveStorage> >; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': compute_scale.cpp:62:79: required from here compute_scale.cpp:21:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocSingular.dll tmp.def RcppExports.o compute_scale.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BiocSingular.buildbin-libdir/BiocSingular/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BiocSingular' as BiocSingular_1.2.2.zip * DONE (BiocSingular)