Jonathan Cairns
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/BayesPeak |
| Branch: RELEASE_3_10 |
| Last Commit: edf7c38 |
| Last Changed Date: 2019-10-29 13:08:15 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:19:14 -0400 (Wed, 15 Apr 2020).
| Package 119/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BayesPeak 1.38.0 Jonathan Cairns
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BayesPeak |
| Version: 1.38.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BayesPeak_1.38.0.tar.gz && rm -rf BayesPeak.buildbin-libdir && mkdir BayesPeak.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesPeak.buildbin-libdir BayesPeak_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BayesPeak_1.38.0.zip && rm BayesPeak_1.38.0.tar.gz BayesPeak_1.38.0.zip |
| StartedAt: 2020-04-14 19:18:33 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:19:00 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 26.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BayesPeak_1.38.0.tar.gz && rm -rf BayesPeak.buildbin-libdir && mkdir BayesPeak.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesPeak.buildbin-libdir BayesPeak_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BayesPeak_1.38.0.zip && rm BayesPeak_1.38.0.tar.gz BayesPeak_1.38.0.zip
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install for i386
* installing *source* package 'BayesPeak' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c bayespeak.c -o bayespeak.o
bayespeak.c: In function 'bayespeak':
bayespeak.c:176:27: warning: variable 'M' set but not used [-Wunused-but-set-variable]
double M1, M2, M3, M4, M, a, b;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BayesPeak.dll tmp.def bayespeak.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BayesPeak.buildbin-libdir/00LOCK-BayesPeak/00new/BayesPeak/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BayesPeak'
finding HTML links ... done
bayespeak html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpGU3xyU/R.INSTALLb287b2e5a47/BayesPeak/man/bayespeak.Rd:72: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpGU3xyU/R.INSTALLb287b2e5a47/BayesPeak/man/bayespeak.Rd:76: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
overfitting html
plot.PP html
plot.bed html
plot.job html
raw.output.H3K4me3 html
raw.output html
read.bed html
summarise.peaks html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BayesPeak' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c bayespeak.c -o bayespeak.o
bayespeak.c: In function 'bayespeak':
bayespeak.c:176:27: warning: variable 'M' set but not used [-Wunused-but-set-variable]
double M1, M2, M3, M4, M, a, b;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BayesPeak.dll tmp.def bayespeak.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BayesPeak.buildbin-libdir/BayesPeak/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BayesPeak' as BayesPeak_1.38.0.zip
* DONE (BayesPeak)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BayesPeak' successfully unpacked and MD5 sums checked