Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:40:47 -0400 (Wed, 15 Apr 2020).
Package 41/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ALDEx2 1.18.0 Greg Gloor
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: ALDEx2 |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ALDEx2.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ALDEx2_1.18.0.tar.gz |
StartedAt: 2020-04-15 00:18:48 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 00:22:41 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 233.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ALDEx2.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ALDEx2.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ALDEx2_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/ALDEx2.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ALDEx2/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ALDEx2’ version ‘1.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ALDEx2’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed aldex.corr 12.246 0.178 12.512 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ALDEx2.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ALDEx2 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘ALDEx2’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ALDEx2)
ALDEx2.Rcheck/tests/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ALDEx2) > > test_check("ALDEx2") ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 22 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 0 ] > > proc.time() user system elapsed 52.324 1.274 54.162
ALDEx2.Rcheck/ALDEx2-Ex.timings
name | user | system | elapsed | |
ALDEx2m-package | 0.001 | 0.000 | 0.000 | |
aldex | 2.214 | 0.255 | 2.488 | |
aldex.clr-class | 0.066 | 0.003 | 0.069 | |
aldex.clr.function-methods | 0.069 | 0.003 | 0.073 | |
aldex.corr | 12.246 | 0.178 | 12.512 | |
aldex.effect | 3.449 | 0.026 | 3.501 | |
aldex.glm | 1.251 | 0.024 | 1.279 | |
aldex.kw | 2.287 | 0.007 | 2.309 | |
aldex.set.mode | 0.063 | 0.003 | 0.067 | |
aldex.ttest | 0.197 | 0.003 | 0.204 | |
expectedDistance | 0.497 | 0.050 | 0.550 | |
getDenom-method | 0.128 | 0.003 | 0.135 | |
getFeatureNames-method | 0.065 | 0.002 | 0.068 | |
getFeatures-method | 0.072 | 0.003 | 0.076 | |
getMonteCarloInstances-method | 0.058 | 0.002 | 0.062 | |
getMonteCarloReplicate-method | 0.068 | 0.002 | 0.070 | |
getMonteCarloSample-method | 0.065 | 0.003 | 0.068 | |
getReads-method | 0.077 | 0.002 | 0.080 | |
getSampleIDs-method | 0.051 | 0.002 | 0.052 | |
numConditions-method | 0.050 | 0.002 | 0.052 | |
numFeatures-method | 0.075 | 0.003 | 0.078 | |
numMCInstances-method | 0.064 | 0.001 | 0.066 | |
plot.aldex | 0.001 | 0.000 | 0.000 | |
plotFeature.aldex | 0.367 | 0.045 | 0.413 | |