BioC experimental data: CHECK report for miRNATarget on zin2

Package: miRNATarget

Version: 1.6.0

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.6.0.tar.gz

StartedAt: 2015-10-07 10:18:41 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 10:19:55 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 73.7 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.6.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [2s/4s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/21s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.1-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.017	0.000	0.041
HS_refseq_to_affy_hc_g110	0.006	0.000	0.005
HS_refseq_to_affy_hg_focus	0.019	0.000	0.031
HS_refseq_to_affy_hg_u133_plus_2	0.071	0.004	0.158
HS_refseq_to_affy_hg_u133a	0.045	0.000	0.071
HS_refseq_to_affy_hg_u133a_2	0.050	0.000	0.052
HS_refseq_to_affy_hg_u133b	0.021	0.000	0.022
HS_refseq_to_affy_hg_u95a	0.025	0.000	0.025
HS_refseq_to_affy_hg_u95av2	0.024	0.000	0.023
HS_refseq_to_affy_hg_u95b	0.03	0.00	0.03
HS_refseq_to_affy_hg_u95c	0.012	0.000	0.019
HS_refseq_to_affy_hg_u95d	0.007	0.000	0.007
HS_refseq_to_affy_hg_u95e	0.012	0.000	0.042
HS_refseq_to_affy_huex_1_0_st_v2	1.127	0.039	1.688
HS_refseq_to_affy_hugene_1_0_st_v1	0.055	0.000	0.081
HS_refseq_to_affy_hugenefl	0.017	0.000	0.039
HS_refseq_to_affy_u133_x3p	0.075	0.004	0.166
HS_refseq_to_agilent_cgh_44b	0.015	0.000	0.026
HS_refseq_to_agilent_wholegenome	0.081	0.000	0.116
HS_refseq_to_canonical_transcript_stable_id	0.077	0.000	0.078
HS_refseq_to_ccds	0.041	0.000	0.041
HS_refseq_to_codelink	0.043	0.000	0.043
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.003	0.000	0.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.002	0.000	0.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.000	0.004	0.002
HS_refseq_to_embl	0.839	0.000	1.324
HS_refseq_to_ensembl_exon_id	0.000	0.004	0.003
HS_refseq_to_ensembl_gene_id	0.056	0.000	0.093
HS_refseq_to_ensembl_peptide_id	0.050	0.000	0.097
HS_refseq_to_ensembl_transcript_id	0.059	0.000	0.119
HS_refseq_to_entrezgene	0.051	0.004	0.115
HS_refseq_to_hgnc_id	0.051	0.000	0.102
HS_refseq_to_hgnc_symbol	0.053	0.000	0.115
HS_refseq_to_hgnc_transcript_name	0.060	0.000	0.118
HS_refseq_to_illumina_humanht_12	0.053	0.008	0.098
HS_refseq_to_illumina_humanwg_6_v1	0.149	0.000	0.166
HS_refseq_to_illumina_humanwg_6_v2	0.046	0.000	0.086
HS_refseq_to_illumina_humanwg_6_v3	0.053	0.000	0.083
HS_refseq_to_interpro	0.133	0.004	0.277
HS_refseq_to_ipi	0.127	0.000	0.211
HS_refseq_to_merops	0.005	0.000	0.005
HS_refseq_to_pdb	0.243	0.000	0.497
HS_refseq_to_pfam	0.071	0.000	0.095
HS_refseq_to_phalanx_onearray	0.041	0.000	0.086
HS_refseq_to_protein_id	0.968	0.008	1.628
HS_refseq_to_refseq_dna	0.063	0.000	0.063
HS_refseq_to_refseq_genomic	0.001	0.000	0.001
HS_refseq_to_refseq_peptide	0.106	0.000	0.106
HS_refseq_to_rfam	0.003	0.000	0.003
HS_refseq_to_rfam_gene_name	0.001	0.000	0.001
HS_refseq_to_rfam_transcript_name	0.002	0.000	0.014
HS_refseq_to_smart	0.040	0.000	0.076
HS_refseq_to_tigrfam	0.006	0.000	0.006
HS_refseq_to_ucsc	0.100	0.000	0.204
HS_refseq_to_unigene	0.070	0.000	0.135
HS_refseq_to_uniprot_genename	0.048	0.000	0.097
HS_refseq_to_uniprot_genename_transcript_name	0.002	0.000	0.002
HS_refseq_to_uniprot_sptrembl	0.002	0.000	0.015
HS_refseq_to_uniprot_swissprot	0.002	0.000	0.003
HS_refseq_to_uniprot_swissprot_accession	0.002	0.000	0.003
HS_refseq_to_wikigene_id	0.002	0.000	0.003
HS_refseq_to_wikigene_name	0.178	0.000	0.359
MM_conv_id	0.002	0.000	0.002
MM_refseq_to_affy_mg_u74a	0.015	0.000	0.031
MM_refseq_to_affy_mg_u74av2	0.016	0.000	0.025
MM_refseq_to_affy_mg_u74b	0.011	0.000	0.016
MM_refseq_to_affy_mg_u74bv2	0.013	0.000	0.037
MM_refseq_to_affy_mg_u74c	0.005	0.000	0.005
MM_refseq_to_affy_mg_u74cv2	0.003	0.004	0.018
MM_refseq_to_affy_moe430a	0.030	0.000	0.067
MM_refseq_to_affy_moe430b	0.011	0.004	0.026
MM_refseq_to_affy_moex_1_0_st_v1	0.388	0.000	0.630
MM_refseq_to_affy_mogene_1_0_st_v1	0.042	0.000	0.075
MM_refseq_to_affy_mouse430_2	0.050	0.000	0.097
MM_refseq_to_affy_mouse430a_2	0.036	0.000	0.073
MM_refseq_to_affy_mu11ksuba	0.012	0.000	0.023
MM_refseq_to_affy_mu11ksubb	0.008	0.000	0.017
MM_refseq_to_agilent_wholegenome	0.064	0.000	0.127
MM_refseq_to_canonical_transcript_stable_id	0.062	0.000	0.127
MM_refseq_to_ccds	0.082	0.000	0.142
MM_refseq_to_codelink	0.030	0.000	0.029
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.002	0.000	0.003
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.002	0.000	0.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.002	0.000	0.002
MM_refseq_to_embl	0.309	0.000	0.497
MM_refseq_to_ensembl_exon_id	0.000	0.004	0.006
MM_refseq_to_ensembl_gene_id	0.038	0.000	0.077
MM_refseq_to_ensembl_peptide_id	0.038	0.000	0.067
MM_refseq_to_ensembl_transcript_id	0.037	0.000	0.039
MM_refseq_to_entrezgene	0.035	0.000	0.036
MM_refseq_to_fantom	0.219	0.000	0.219
MM_refseq_to_illumina_mousewg_6_v1	0.171	0.000	0.179
MM_refseq_to_illumina_mousewg_6_v2	0.048	0.000	0.048
MM_refseq_to_interpro	0.105	0.000	0.185
MM_refseq_to_ipi	0.001	0.000	0.001
MM_refseq_to_merops	0.004	0.000	0.004
MM_refseq_to_mgi_id	0.035	0.000	0.079
MM_refseq_to_mgi_symbol	0.036	0.000	0.084
MM_refseq_to_mgi_transcript_name	0.035	0.000	0.075
MM_refseq_to_pdb	0.061	0.000	0.108
MM_refseq_to_pfam	0.060	0.000	0.125
MM_refseq_to_phalanx_onearray	0.032	0.000	0.056
MM_refseq_to_protein_id	0.342	0.000	0.685
MM_refseq_to_refseq_dna	0.216	0.004	0.288
MM_refseq_to_refseq_peptide	0.066	0.000	0.069
MM_refseq_to_rfam	0.002	0.000	0.002
MM_refseq_to_rfam_gene_name	0.002	0.000	0.001
MM_refseq_to_rfam_transcript_name	0.002	0.000	0.002
MM_refseq_to_smart	0.028	0.000	0.051
MM_refseq_to_tigrfam	0.004	0.000	0.016
MM_refseq_to_ucsc	0.034	0.000	0.058
MM_refseq_to_unigene	0.045	0.000	0.085
MM_refseq_to_uniprot_genename	0.031	0.000	0.068
MM_refseq_to_uniprot_genename_transcript_name	0.003	0.000	0.002
MM_refseq_to_uniprot_sptrembl	0.002	0.000	0.002
MM_refseq_to_uniprot_swissprot	0.002	0.000	0.002
MM_refseq_to_uniprot_swissprot_accession	0.003	0.000	0.002
MM_refseq_to_wikigene_id	0.003	0.000	0.002
MM_refseq_to_wikigene_name	0.033	0.000	0.032
TBL2	0.928	0.016	1.172
TBL2_HS	1.535	0.036	2.864
TBL2_MM	0.854	0.012	1.561
conv_id	0.003	0.000	0.002
id_conv	0.032	0.000	0.063