BioC 3.1: CHECK report for unifiedWMWqPCR on petty

Package: unifiedWMWqPCR

Version: 1.4.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings unifiedWMWqPCR_1.4.0.tar.gz

StartedAt: 2015-10-09 02:30:58 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 02:32:24 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 86.9 seconds

RetCode: 0

Status:  OK

CheckDir: unifiedWMWqPCR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings unifiedWMWqPCR_1.4.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.1-bioc/meat/unifiedWMWqPCR.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘unifiedWMWqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘unifiedWMWqPCR’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘unifiedWMWqPCR’ can be installed ... [6s/6s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
uWMW,qPCRset : .local: no visible global function definition for
  ‘exprs’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.1-bioc/meat/unifiedWMWqPCR.Rcheck/00check.log’
for details.

* installing *source* package ‘unifiedWMWqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘order’ from package ‘base’ in package ‘unifiedWMWqPCR’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (unifiedWMWqPCR)

name	user	system	elapsed
NBdata	0.060	0.005	0.065
as.matrix.uwmwEstimate	1.636	0.054	1.691
as.matrix.uwmwRes	1.306	0.044	1.350
forestplot-methods	1.390	0.027	1.419
getEstimate-methods	1.382	0.040	1.422
plot	1.366	0.027	1.394
sort.uwmwRes	1.269	0.027	1.297
uWMW-methods	2.528	0.055	2.584
uwmw_Accessors	1.257	0.022	1.281
uwmw_Extract	1.446	0.029	1.476
volcanopar	0.001	0.000	0.001
volcanoplot-methods	1.261	0.024	1.286