BioC 3.1: CHECK report for supraHex on zin2

Package: supraHex

Version: 1.6.0

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.6.0.tar.gz

StartedAt: 2015-10-09 05:54:31 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 05:55:03 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 31.5 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/supraHex.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [9s/9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.046	0.004	0.054
sCompReorder	0.718	0.004	0.720
sDistance	0.098	0.004	0.102
sDmat	0.118	0.003	0.122
sDmatCluster	0.207	0.000	0.218
sDmatMinima	0.120	0.004	0.124
sHexDist	0.004	0.000	0.003
sHexGrid	0.003	0.000	0.003
sInitial	0.004	0.000	0.004
sMapOverlay	0.177	0.000	0.177
sNeighAny	0.007	0.000	0.008
sNeighDirect	0.005	0.000	0.004
sPipeline	0.269	0.000	0.269
sTopology	0.018	0.000	0.018
sTrainBatch	0.045	0.000	0.045
sTrainSeq	0.387	0.000	0.387
sTrainology	0.004	0.000	0.004
sWriteData	0.159	0.000	0.159
visColoralpha	0.005	0.000	0.005
visColorbar	0.036	0.000	0.036
visColormap	0.005	0.000	0.005
visCompReorder	1.048	0.004	1.052
visDmatCluster	0.25	0.00	0.25
visDmatHeatmap	0.175	0.000	0.176
visHeatmap	0.091	0.000	0.090
visHeatmapAdv	0.418	0.004	0.422
visHexComp	0.102	0.004	0.106
visHexGrid	0.099	0.000	0.099
visHexMapping	1.310	0.004	1.313
visHexMulComp	0.588	0.004	0.601
visHexPattern	1.148	0.032	1.179
visKernels	0.011	0.000	0.011
visTreeBootstrap	0.171	0.000	0.172
visVp	0.024	0.000	0.024