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BioC 3.1: CHECK report for sidap on moscato2

This page was generated on 2015-02-09 10:48:53 -0800 (Mon, 09 Feb 2015).

Package 850/967HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sidap 0.99.9
Chen Jinmiao , Chen Hao
Snapshot Date: 2015-02-08 17:20:14 -0800 (Sun, 08 Feb 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sidap
Last Changed Rev: 98393 / Revision: 99214
Last Changed Date: 2015-01-16 02:05:58 -0800 (Fri, 16 Jan 2015)
zin2 Linux (Ubuntu 14.04.1 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: sidap
Version: 0.99.9
Command: rm -rf sidap.buildbin-libdir sidap.Rcheck && mkdir sidap.buildbin-libdir sidap.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sidap.buildbin-libdir sidap_0.99.9.tar.gz >sidap.Rcheck\00install.out 2>&1 && cp sidap.Rcheck\00install.out sidap-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=sidap.buildbin-libdir --install="check:sidap-install.out" --force-multiarch --no-vignettes --timings sidap_0.99.9.tar.gz
StartedAt: 2015-02-09 05:08:38 -0800 (Mon, 09 Feb 2015)
EndedAt: 2015-02-09 05:15:17 -0800 (Mon, 09 Feb 2015)
EllapsedTime: 398.5 seconds
RetCode: 0
Status:  OK  
CheckDir: sidap.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf sidap.buildbin-libdir sidap.Rcheck && mkdir sidap.buildbin-libdir sidap.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sidap.buildbin-libdir sidap_0.99.9.tar.gz >sidap.Rcheck\00install.out 2>&1 && cp sidap.Rcheck\00install.out sidap-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=sidap.buildbin-libdir --install="check:sidap-install.out" --force-multiarch --no-vignettes --timings sidap_0.99.9.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/sidap.Rcheck'
* using R Under development (unstable) (2015-01-31 r67686)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sidap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sidap' version '0.99.9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sidap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [123s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
DensVM_cluster 116.02   0.33  116.36
** running examples for arch 'x64' ... [139s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
DensVM_cluster 130.29   0.39  130.76
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [5s]
 [5s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [6s]
 [6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

sidap.Rcheck/00install.out:


install for i386

* installing *source* package 'sidap' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'sidap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sidap' as sidap_0.99.9.zip
* DONE (sidap)

sidap.Rcheck/examples_i386/sidap-Ex.timings:

nameusersystemelapsed
DensVM_cluster116.02 0.33116.36
clust_mean_heatmap0.050.000.05
clust_percentage_heatmap0.040.000.04
clust_state0.020.000.02
cluster_gridPlot0.470.000.47
cluster_plot0.320.000.32
cytof_dimReduction1.240.001.24
cytof_tsne_densvm000
cytof_tsne_densvm_GUI000
cytof_write_resluts000
fcs_lgcl0.610.010.62
fcs_lgcl_merge0.600.020.63
peaksGamma_plot0.120.000.13
sidap000

sidap.Rcheck/examples_x64/sidap-Ex.timings:

nameusersystemelapsed
DensVM_cluster130.29 0.39130.76
clust_mean_heatmap0.050.000.05
clust_percentage_heatmap0.030.000.03
clust_state0.010.000.02
cluster_gridPlot0.690.000.68
cluster_plot0.360.000.36
cytof_dimReduction1.310.001.31
cytof_tsne_densvm000
cytof_tsne_densvm_GUI000
cytof_write_resluts000
fcs_lgcl0.610.000.61
fcs_lgcl_merge0.600.010.61
peaksGamma_plot0.140.000.14
sidap0.010.000.01