BioC 3.1: CHECK report for savR on zin2
This page was generated on 2015-10-09 09:25:54 -0700 (Fri, 09 Oct 2015).
savR 1.7.5 R. Brent Calder
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/savR | Last Changed Rev: 106840 / Revision: 109384 | Last Changed Date: 2015-07-28 09:16:33 -0700 (Tue, 28 Jul 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |  |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |  |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |  |
Summary
Package: savR |
Version: 1.7.5 |
Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings savR_1.7.5.tar.gz |
StartedAt: 2015-10-09 05:20:08 -0700 (Fri, 09 Oct 2015) |
EndedAt: 2015-10-09 05:21:14 -0700 (Fri, 09 Oct 2015) |
EllapsedTime: 66.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: savR.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings savR_1.7.5.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/savR.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘savR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘savR’ version ‘1.7.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘savR’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [36s/36s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’ [7s/7s]
[7s/7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
savR.Rcheck/00install.out:
* installing *source* package ‘savR’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (savR)
savR.Rcheck/savR-Ex.timings:
name | user | system | elapsed
|
buildReports | 0.001 | 0.000 | 0.000 |
|
clusterQualityGtN | 0.000 | 0.000 | 0.001 |
|
clusters | 0.001 | 0.000 | 0.000 |
|
correctedIntensities | 3.019 | 0.004 | 3.024 |
|
cycles | 2.944 | 0.000 | 2.950 |
|
directions | 3.067 | 0.003 | 3.073 |
|
errorMetrics | 2.896 | 0.000 | 2.897 |
|
extractionMetrics | 3.043 | 0.000 | 3.051 |
|
flowcellLayout | 2.747 | 0.004 | 2.752 |
|
location | 2.931 | 0.000 | 2.932 |
|
pfClusters | 0 | 0 | 0 |
|
qualityMetrics | 2.961 | 0.008 | 2.978 |
|
reads | 2.884 | 0.004 | 2.890 |
|
run | 2.818 | 0.000 | 2.820 |
|
savR | 2.771 | 0.000 | 2.771 |
|
tileMetrics | 2.819 | 0.004 | 2.825 |
|