BioC 3.1: CHECK report for roar on moscato2

Package: roar

Version: 1.4.0

Command: rm -rf roar.buildbin-libdir roar.Rcheck && mkdir roar.buildbin-libdir roar.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.4.0.tar.gz >roar.Rcheck\00install.out 2>&1 && cp roar.Rcheck\00install.out roar-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.4.0.tar.gz

StartedAt: 2015-10-09 05:45:36 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 05:49:45 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 249.5 seconds

RetCode: 0

Status:  OK

CheckDir: roar.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf roar.buildbin-libdir roar.Rcheck && mkdir roar.buildbin-libdir roar.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.4.0.tar.gz >roar.Rcheck\00install.out 2>&1 && cp roar.Rcheck\00install.out roar-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.4.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/roar.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'roar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'roar' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'roar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
** running examples for arch 'x64' ... [14s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [15s]
 [15s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [17s]
 [18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'roar' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'

install for x64

* installing *source* package 'roar' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* MD5 sums
packaged installation of 'roar' as roar_1.4.0.zip
* DONE (roar)

name	user	system	elapsed
RoarDataset-class	0.01	0.00	0.01
RoarDataset-constructor	0.36	0.00	0.36
RoarDatasetFromFiles-constructor	0	0	0
computePairedPvals-method	0.76	0.02	0.78
computePvals-method	0.50	0.01	0.51
computeRoars-method	0.53	0.00	0.53
countPrePost-method	0.53	0.00	0.53
countResults-method	0.50	0.03	0.54
fpkmResults-method	0.58	0.04	0.60
pvalueCorrectFilter-method	0.49	0.01	0.50
pvalueFilter-method	0.49	0.02	0.50
standardFilter-method	0.57	0.00	0.58
totalResults-method	0.48	0.01	0.50

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.39	0.02	0.41
RoarDatasetFromFiles-constructor	0	0	0
computePairedPvals-method	1	0	1
computePvals-method	0.67	0.01	0.69
computeRoars-method	0.59	0.00	0.60
countPrePost-method	0.55	0.02	0.56
countResults-method	0.56	0.00	0.56
fpkmResults-method	0.60	0.00	0.59
pvalueCorrectFilter-method	0.59	0.04	0.64
pvalueFilter-method	0.65	0.02	0.67
standardFilter-method	0.56	0.02	0.57
totalResults-method	0.56	0.00	0.56