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BioC 3.1: INSTALL report for plier on zin2

This page was generated on 2015-10-09 09:22:54 -0700 (Fri, 09 Oct 2015).

Package 727/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plier 1.38.0
Crispin Miller
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/plier
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: plier
Version: 1.38.0
Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD INSTALL plier
StartedAt: 2015-10-08 18:04:09 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 18:04:12 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 3.5 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD INSTALL plier
###
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* installing to library ‘/home/biocbuild/bbs-3.1-bioc/R/library’
* installing *source* package ‘plier’ ...
** libs
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c affyplier.cpp -o affyplier.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c plier_impl.cpp -o plier_impl.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function ‘long int NewtonPlier(plier_data*, double&)’:
plieralg.cpp:905:14: warning: variable ‘icount’ set but not used [-Wunused-but-set-variable]
  long count, icount;
              ^
plieralg.cpp:1257:24: warning: ‘LogLikelihood’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  output = LogLikelihood/nSize;
                        ^
plieralg.cpp: At global scope:
plieralg.cpp:49:12: warning: ‘g_ErrorCode’ defined but not used [-Wunused-variable]
 static int g_ErrorCode=NoError;
            ^
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c rwrapper.cpp -o rwrapper.o
g++ -shared -L/home/biocbuild/bbs-3.1-bioc/R/lib -L/usr/local/lib -o plier.so affyplier.o plier_impl.o plieralg.o rwrapper.o -L/home/biocbuild/bbs-3.1-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.1-bioc/R/library/plier/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (plier)