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BioC 3.1: CHECK report for mogsa on moscato2

This page was generated on 2015-10-09 09:32:14 -0700 (Fri, 09 Oct 2015).

Package 618/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mogsa 1.0.3
Chen Meng
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/mogsa
Last Changed Rev: 106679 / Revision: 109384
Last Changed Date: 2015-07-23 03:01:37 -0700 (Thu, 23 Jul 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mogsa
Version: 1.0.3
Command: rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.0.3.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.0.3.tar.gz
StartedAt: 2015-10-09 04:00:10 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 04:03:33 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 202.6 seconds
RetCode: 0
Status:  OK  
CheckDir: mogsa.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.0.3.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.0.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/mogsa.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mogsa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mogsa' version '1.0.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mogsa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [16s] OK
** running examples for arch 'x64' ... [19s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

mogsa.Rcheck/00install.out:


install for i386

* installing *source* package 'mogsa' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'

install for x64

* installing *source* package 'mogsa' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* MD5 sums
packaged installation of 'mogsa' as mogsa_1.0.3.zip
* DONE (mogsa)

mogsa.Rcheck/examples_i386/mogsa-Ex.timings:

nameusersystemelapsed
GIS1.210.021.23
annotate.gs0.350.020.36
box.gs.feature0.480.000.48
combine-methods1.040.011.06
decompose.gs.group0.440.000.44
decompose.gs.ind0.280.000.28
getmgsa0.310.000.31
matpower000
mgsa-class0.580.000.58
moa-class0.110.020.13
moa0.450.000.45
moa.sup-class0.170.000.18
mogsa-package0.620.000.62
mogsa0.690.000.69
pairwise.rv0.300.000.29
plotGS0.280.000.28
prepGraphite0.170.010.61
prepMsigDB0.010.000.02
prepSupMoa1.770.051.81
sup.moa0.580.010.60
wsvd000

mogsa.Rcheck/examples_x64/mogsa-Ex.timings:

nameusersystemelapsed
GIS1.560.031.59
annotate.gs0.580.000.58
box.gs.feature0.830.020.84
combine-methods1.260.001.27
decompose.gs.group0.300.000.29
decompose.gs.ind0.620.000.63
getmgsa0.270.000.26
matpower000
mgsa-class0.790.000.80
moa-class0.20.00.2
moa0.580.010.59
moa.sup-class0.200.000.21
mogsa-package0.740.000.73
mogsa0.70.00.7
pairwise.rv0.050.000.05
plotGS0.310.000.31
prepGraphite0.210.000.20
prepMsigDB000
prepSupMoa1.690.031.72
sup.moa0.910.000.90
wsvd000