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BioC 3.1: BUILD BIN report for methylPipe on petty

This page was generated on 2015-10-09 09:36:47 -0700 (Fri, 09 Oct 2015).

Package 592/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylPipe 1.2.6
Kamal Kishore
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/methylPipe
Last Changed Rev: 108919 / Revision: 109384
Last Changed Date: 2015-09-29 02:46:22 -0700 (Tue, 29 Sep 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: methylPipe
Version: 1.2.6
Command: rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh methylPipe_1.2.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R methylPipe.buildbin-libdir
StartedAt: 2015-10-09 03:15:32 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 03:16:08 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 35.4 seconds
RetCode: 0
Status:  OK 
PackageFile: methylPipe_1.2.6.tgz
PackageFileSize: 782.5 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh methylPipe_1.2.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R methylPipe.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=methylPipe.buildbin-libdir methylPipe_1.2.6.tar.gz'
>>>>>>> 

* installing *source* package ‘methylPipe’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c R_init_methylPipe.c -o R_init_methylPipe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c binning.c -o binning.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o methylPipe.so R_init_methylPipe.o binning.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/methylPipe.buildbin-libdir/methylPipe/libs
** R
** exec
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (methylPipe)


>>>>>>> 
>>>>>>> FIXING LINKS FOR methylPipe.buildbin-libdir/methylPipe/libs//methylPipe.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "methylPipe.buildbin-libdir/methylPipe/libs//methylPipe.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "methylPipe.buildbin-libdir/methylPipe/libs//methylPipe.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "methylPipe.buildbin-libdir/methylPipe/libs//methylPipe.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "methylPipe.buildbin-libdir/methylPipe/libs//methylPipe.so"