mcaGUI 1.16.0
Wade K. Copeland
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/mcaGUI | | Last Changed Rev: 102591 / Revision: 109384 | | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf mcaGUI.buildbin-libdir mcaGUI.Rcheck && mkdir mcaGUI.buildbin-libdir mcaGUI.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mcaGUI.buildbin-libdir mcaGUI_1.16.0.tar.gz >mcaGUI.Rcheck\00install.out 2>&1 && cp mcaGUI.Rcheck\00install.out mcaGUI-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=mcaGUI.buildbin-libdir --install="check:mcaGUI-install.out" --force-multiarch --no-vignettes --timings mcaGUI_1.16.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/mcaGUI.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mcaGUI/DESCRIPTION' ... OK
* this is package 'mcaGUI' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'iplots'
Depends: includes the non-default packages:
'lattice' 'MASS' 'proto' 'foreign' 'gWidgets' 'gWidgetsRGtk2'
'OTUbase' 'vegan' 'bpca'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mcaGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'OTUbase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
'gWidgets' 'gWidgetsRGtk2' 'lattice'
Please remove these calls from your code.
Packages in Depends field not imported from:
'MASS' 'OTUbase' 'bpca' 'foreign' 'gWidgets' 'gWidgetsRGtk2'
'lattice' 'proto' 'vegan'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
':::' calls which should be '::':
'gWidgets:::editFormulaDialog' 'utils:::getCRANmirrors'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'mcaGUI/R/zzz.R':
.onLoad calls:
cat("Loading mcaGUI()\n")
print("You can access the mcaGUI vignette by browsing to: ")
print(system.file("doc", "An_Introduction_and_User_Guide_for_mcaGUI.pdf", package = "mcaGUI"))
Package startup functions should use 'packageStartupMessage' to
generate messages.
See section 'Good practice' in '?.onAttach'.
Found the following possibly unsafe calls:
File 'mcaGUI/R/ibestgui.filemenu.R':
assignInNamespace("pmg.window", NULL, "ibestGUI")
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to: "
[1] ""
GUI requires an interactive environment
Proportion_Or_Count_Reader : .readRDP: warning in read.table(file =
dirPath, head = F, sep = "\t", stringsAsFactors = F): partial
argument match of 'head' to 'header'
getAllPackages: warning in .packages(all = TRUE): partial argument
match of 'all' to 'all.available'
.editDFProperties : <anonymous>: no visible binding for global variable
'getType'
.editDFProperties : <anonymous>: no visible global function definition
for 'ggroup'
.editDFProperties : <anonymous>: no visible global function definition
for 'glabel'
.editDFProperties : <anonymous>: no visible global function definition
for 'glayout'
.editDFProperties : <anonymous>: no visible global function definition
for 'gdroplist'
.editDFProperties : <anonymous>: no visible global function definition
for 'svalue<-'
.editDFProperties : <anonymous>: no visible global function definition
for 'gedit'
.editDFProperties : <anonymous>: no visible global function definition
for 'visible<-'
.editDFProperties : <anonymous>: no visible global function definition
for 'gseparator'
.editDFProperties : <anonymous>: no visible global function definition
for 'gdf'
.editDFProperties : <anonymous> : getIndex: no visible global function
definition for 'svalue'
.editDFProperties : <anonymous>: no visible global function definition
for 'addHandlerChanged'
.editDFProperties : <anonymous> : <anonymous>: no visible global
function definition for 'svalue'
.editDFProperties : <anonymous> : updateDF: no visible global function
definition for 'delete'
.editDFProperties : <anonymous> : updateDF: no visible global function
definition for 'gdf'
.editDFProperties : <anonymous> : updateNames: no visible global
function definition for 'delete'
.editDFProperties : <anonymous> : updateNames: no visible global
function definition for 'gdroplist'
.editDFProperties : <anonymous> : updateNames: no visible global
function definition for 'svalue<-'
.editDFProperties : <anonymous> : updateNames: no visible global
function definition for 'addHandlerChanged'
.editDFProperties : <anonymous> : updateNames : <anonymous>: no visible
global function definition for 'svalue'
.editDFProperties : <anonymous> : updateNames : <anonymous>: no visible
global function definition for 'svalue<-'
.editDFProperties : <anonymous>: no visible global function definition
for 'svalue'
.editDFProperties : <anonymous>: no visible global function definition
for 'gconfirm'
.editDFProperties : <anonymous>: no visible global function definition
for 'dispose'
.newSet : setISetByName: no visible global function definition for
'iset.list'
.newSet : setISetByName: no visible global function definition for
'iset.set'
.newSet: no visible global function definition for 'iset.list'
.newSet: no visible global function definition for 'iset.set'
.newSet: no visible global function definition for 'iset.new'
.newSet: no visible global function definition for 'iset.df'
.newSet: no visible global function definition for 'gtable'
.newSet: no visible global function definition for 'adddropsource'
.newSet: no visible global function definition for 'gdroplist'
.newSet: no visible global function definition for 'gimage'
.newSet: no visible global function definition for 'glabel'
.newSet: no visible global function definition for 'gbutton'
.newSet: no visible global function definition for 'gtext'
.newSet: no visible global function definition for 'ggroup'
.newSet: no visible global function definition for 'gpanedgroup'
.newSet: no visible global function definition for 'add'
.newSet: no visible global function definition for 'size<-'
.newSet: no visible global function definition for 'gframe'
.newSet: no visible global function definition for 'addhandlerchanged'
.newSet : <anonymous>: no visible global function definition for
'svalue'
.newSet : <anonymous>: no visible global function definition for 'ibox'
.newSet : <anonymous>: no visible global function definition for
'imosaic'
.newSet : <anonymous>: no visible global function definition for 'ipcp'
.newSet : <anonymous>: no visible global function definition for
'svalue<-'
.newSet: no visible global function definition for 'addhandlerclicked'
.newSet : <anonymous>: no visible global function definition for
'iset.selected'
.newSet : <anonymous>: no visible global function definition for
'iset.select'
.newSet : <anonymous>: no visible global function definition for
'iplot.cur'
.newSet : <anonymous>: no visible global function definition for
'iplot.list'
.newSet : <anonymous>: no visible global function definition for
'iplot.set'
.newSet : <anonymous>: no visible global function definition for
'ggroup'
.newSet : <anonymous>: no visible global function definition for
'gframe'
.newSet : <anonymous>: no visible global function definition for
'glabel'
.newSet : <anonymous>: no visible global function definition for
'adddroptarget'
.newSet : <anonymous>: no visible global function definition for
'font<-'
.newSet : <anonymous>: no visible global function definition for
'gcheckbox'
.newSet : <anonymous>: no visible global function definition for
'gbutton'
.newSet : <anonymous> : addTrendLine: no visible global function
definition for 'svalue'
.newSet : <anonymous> : addTrendLine: no visible global function
definition for 'iset.selected'
.newSet : <anonymous> : addTrendLine: no visible global function
definition for 'iabline'
.newSet : <anonymous> : addTrendLine: no visible global function
definition for 'ilines'
.newSet : <anonymous>: no visible global function definition for
'gedit'
.newSet : <anonymous> : <anonymous>: no visible global function
definition for 'svalue'
.newSet : <anonymous>: no visible global function definition for
'addSpring'
.newSet : <anonymous> : <anonymous>: no visible global function
definition for 'dispose'
.newSet : <anonymous>: no visible global function definition for
'iobj.rm'
.newSet : <anonymous>: no visible global function definition for
'iobj.cur'
.newSet : <anonymous>: no visible global function definition for
'.jstrVal'
.newSet : getCurrentPlotNameType: no visible global function definition
for 'iplot.list'
.newSet : getCurrentPlotNameType: no visible global function definition
for 'iplot.cur'
.newSet : updateCurrentPlotDescription: no visible global function
definition for 'svalue<-'
OTUbasereader : openHandler: no visible global function definition for
'visible<-'
OTUbasereader : closeHandler: no visible global function definition for
'visible<-'
OTUbasereader: no visible global function definition for 'gwindow'
OTUbasereader: no visible global function definition for 'glayout'
OTUbasereader: no visible global function definition for 'glabel'
OTUbasereader: no visible global function definition for 'gedit'
OTUbasereader: no visible global function definition for 'gfilebrowse'
OTUbasereader: no visible global function definition for 'guiToolkit'
OTUbasereader : setwdHandler: no visible global function definition for
'svalue'
OTUbasereader: no visible global function definition for
'addHandlerChanged'
OTUbasereader: no visible global function definition for 'gradio'
OTUbasereader: no visible global function definition for 'gbutton'
OTUbasereader : OTUbase: no visible global function definition for
'svalue'
OTUbasereader : OTUbase: no visible global function definition for
'svalue<-'
OTUbasereader : OTUbase: no visible binding for '<<-' assignment to
'OTUset'
OTUbasereader : OTUbase: no visible global function definition for
'readOTUset'
OTUbasereader : OTUbase: no visible global function definition for
'aData'
OTUbasereader : OTUbase: no visible global function definition for
'sData'
OTUbasereader : OTUbase: no visible global function definition for
'visible<-'
Proportion_Or_Count_Reader : openHandler: no visible global function
definition for 'visible<-'
Proportion_Or_Count_Reader : closeHandler: no visible global function
definition for 'visible<-'
Proportion_Or_Count_Reader: no visible global function definition for
'gwindow'
Proportion_Or_Count_Reader: no visible global function definition for
'glayout'
Proportion_Or_Count_Reader: no visible global function definition for
'glabel'
Proportion_Or_Count_Reader: no visible global function definition for
'gedit'
Proportion_Or_Count_Reader: no visible global function definition for
'gfilebrowse'
Proportion_Or_Count_Reader: no visible global function definition for
'guiToolkit'
Proportion_Or_Count_Reader: no visible global function definition for
'gradio'
Proportion_Or_Count_Reader: no visible global function definition for
'gbutton'
Proportion_Or_Count_Reader : createAbundanceTable: no visible global
function definition for 'svalue'
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
for global variable 'Sample_Data'
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
for global variable 'collab2'
Proportion_Or_Count_Reader: no visible global function definition for
'addHandlerClicked'
Proportion_Or_Count_Reader : new.window : closeHandler2: no visible
global function definition for 'visible<-'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'gwindow'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'glayout'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'glabel'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'gedit'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'gfilebrowse'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'guiToolkit'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'gradio'
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
visible global function definition for 'svalue'
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
visible global function definition for 'glabel'
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
visible binding for '<<-' assignment to 'collab2'
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
visible global function definition for 'gdroplist'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'gbutton'
Proportion_Or_Count_Reader : new.window: no visible global function
definition for 'addHandlerClicked'
RSiteSearch.Dialog: no visible global function definition for 'glayout'
RSiteSearch.Dialog: no visible global function definition for 'ggroup'
RSiteSearch.Dialog: no visible global function definition for 'glabel'
RSiteSearch.Dialog: no visible global function definition for 'gedit'
RSiteSearch.Dialog: no visible global function definition for
'gdroplist'
RSiteSearch.Dialog: no visible global function definition for
'gspinbutton'
RSiteSearch.Dialog: no visible global function definition for
'visible<-'
RSiteSearch.Dialog: no visible global function definition for 'add'
RSiteSearch.Dialog: no visible global function definition for
'gseparator'
RSiteSearch.Dialog: no visible global function definition for
'addSpring'
RSiteSearch.Dialog: no visible global function definition for 'gbutton'
RSiteSearch.Dialog : <anonymous>: no visible global function definition
for 'dispose'
RSiteSearch.Dialog: no visible global function definition for
'addhandlerclicked'
RSiteSearch.Dialog : <anonymous>: no visible global function definition
for 'svalue'
as.dLatticeExplorer: no visible global function definition for 'tag'
checkForUpdatesGUI: no visible global function definition for 'ggroup'
checkForUpdatesGUI: no visible global function definition for 'glabel'
checkForUpdatesGUI: no visible global function definition for
'gstatusbar'
checkForUpdatesGUI: no visible global function definition for
'visible<-'
checkForUpdatesGUI: no visible global function definition for
'svalue<-'
clearPanel: no visible global function definition for 'tag'
clearPanel: no visible global function definition for 'tag<-'
clearPlot: no visible global function definition for 'tag<-'
clearPlot: no visible global function definition for 'tag'
clearPlot: no visible global function definition for 'removehandler'
clearPlot: no visible global function definition for 'svalue<-'
cluster: no visible global function definition for 'vegdist'
constructionOfNormal: no visible global function definition for
'gwindow'
constructionOfNormal : updatePlot: no visible global function
definition for 'svalue'
constructionOfNormal : updatePlot: no visible binding for global
variable 'x'
constructionOfNormal: no visible global function definition for
'gdroplist'
constructionOfNormal: no visible global function definition for
'addhandlerchanged'
constructionOfNormal : <anonymous>: no visible global function
definition for 'svalue'
constructionOfNormal : <anonymous>: no visible global function
definition for 'svalue<-'
constructionOfNormal : <anonymous>: no visible global function
definition for 'enabled<-'
constructionOfNormal: no visible global function definition for
'glabel'
constructionOfNormal: no visible global function definition for 'gedit'
constructionOfNormal: no visible global function definition for
'gcheckbox'
constructionOfNormal: no visible global function definition for
'ggroup'
constructionOfNormal: no visible global function definition for
'gframe'
constructionOfNormal: no visible global function definition for
'glayout'
constructionOfNormal: no visible global function definition for
'visible<-'
constructionOfNormal: no visible global function definition for 'add'
constructionOfNormal: no visible global function definition for
'addSpring'
constructionOfNormal: no visible global function definition for
'gbutton'
constructionOfNormal : <anonymous>: no visible global function
definition for 'dispose'
constructionOfNormal: no visible global function definition for
'ggraphics'
dLatticeExplorer: no visible global function definition for 'ggroup'
dLatticeExplorer: no visible global function definition for 'ggraphics'
dLatticeExplorer: no visible global function definition for 'tag<-'
dLatticeExplorer: no visible global function definition for 'add'
dLatticeExplorer: no visible global function definition for 'gframe'
dLatticeExplorer : handler: no visible global function definition for
'tag'
dLatticeExplorer : handler: no visible global function definition for
'tag<-'
dLatticeExplorer : handler: no visible global function definition for
'addhandlerchanged'
dLatticeExplorer: no visible global function definition for
'adddroptarget'
dLatticeExplorer: no visible global function definition for 'gbutton'
dLatticeExplorer : <anonymous>: no visible global function definition
for 'svalue<-'
dLatticeExplorer: no visible global function definition for 'addSpring'
dLatticeExplorer: no visible global function definition for 'gdroplist'
dLatticeExplorer : <anonymous>: no visible global function definition
for 'svalue'
dLatticeExplorer : <anonymous>: no visible global function definition
for 'tag<-'
dLatticeExplorer: no visible global function definition for 'svalue<-'
dLatticeExplorer: no visible global function definition for 'glabel'
dLatticeExplorer: no visible global function definition for
'gseparator'
dLatticeExplorer: no visible global function definition for
'gcheckboxgroup'
dLatticeExplorer: no visible global function definition for
'addhandlerunrealize'
dSummaryDialog: no visible global function definition for 'ggroup'
dSummaryDialog: no visible global function definition for 'tag<-'
dSummaryDialog: no visible global function definition for 'glayout'
dSummaryDialog: no visible global function definition for 'glabel'
dSummaryDialog: no visible global function definition for 'font<-'
dSummaryDialog: no visible global function definition for 'enabled<-'
dSummaryDialog: no visible global function definition for 'add'
dSummaryDialog: no visible global function definition for 'visible<-'
dSummaryDialog: no visible global function definition for 'addSpring'
dSummaryDialog: no visible global function definition for 'gbutton'
dSummaryDialog: no visible global function definition for 'gdroplist'
dSummaryDialog: no visible global function definition for 'gseparator'
dSummaryDialog: no visible global function definition for 'gtext'
dSummaryDialog: no visible global function definition for
'addhandlerchanged'
dSummaryDialog : <anonymous>: no visible global function definition for
'tag'
dSummaryDialog : <anonymous>: no visible global function definition for
'removehandler'
dSummaryDialog : <anonymous>: no visible global function definition for
'tag<-'
dSummaryDialog : <anonymous>: no visible global function definition for
'svalue'
dSummaryDialog: no visible global function definition for
'adddroptarget'
dSummaryDialog : <anonymous>: no visible global function definition for
'svalue<-'
dSummaryDialog : <anonymous>: no visible global function definition for
'addhandlerchanged'
dSummaryDialog : <anonymous>: no visible global function definition for
'enabled<-'
dSummaryDialog : clear: no visible global function definition for
'svalue<-'
dSummaryDialog : clear: no visible global function definition for
'dispose'
dSummaryDialog : clear: no visible global function definition for
'tag<-'
dSummaryDialog : update: no visible global function definition for
'tag'
dSummaryDialog : update: no visible global function definition for
'svalue'
dSummaryDialog : update: no visible global function definition for 'id'
dSummaryDialog : update: no visible global function definition for
'dispose'
dSummaryDialog : update: no visible global function definition for
'add'
dSummaryDialog : clearDropHandlers: no visible global function
definition for 'tag'
dSummaryDialog : clearDropHandlers: no visible global function
definition for 'removehandler'
dSummaryDialog: no visible global function definition for
'addhandlerunrealize'
diversityfun: no visible global function definition for 'diversity'
dpqrfuncs: no visible global function definition for 'ggroup'
dpqrfuncs: no visible global function definition for 'glabel'
dpqrfuncs: no visible global function definition for 'gdroplist'
dpqrfuncs: no visible global function definition for 'gedit'
dpqrfuncs: no visible global function definition for 'gcheckbox'
dpqrfuncs: no visible global function definition for 'gtext'
dpqrfuncs: no visible global function definition for 'glayout'
dpqrfuncs: no visible global function definition for 'addSpring'
dpqrfuncs: no visible global function definition for 'gbutton'
dpqrfuncs: no visible global function definition for 'visible<-'
dpqrfuncs: no visible global function definition for
'addhandlerchanged'
dpqrfuncs : <anonymous>: no visible global function definition for
'svalue'
dpqrfuncs : <anonymous>: no visible global function definition for
'svalue<-'
dpqrfuncs : <anonymous>: no visible global function definition for
'enabled<-'
dpqrfuncs : <anonymous>: no visible global function definition for
'ghelp'
getCranSiteIfNeeded : handler: no visible global function definition
for 'svalue'
getCranSiteIfNeeded: no visible global function definition for 'ggroup'
getCranSiteIfNeeded: no visible global function definition for 'glabel'
getCranSiteIfNeeded: no visible global function definition for 'gtable'
getCranSiteIfNeeded: no visible global function definition for 'size<-'
getCranSiteIfNeeded: no visible global function definition for
'gbasicdialog'
histogramAndDensity: no visible global function definition for
'gwindow'
histogramAndDensity : updatePlot: no visible global function definition
for 'svalue'
histogramAndDensity : addDensity: no visible global function definition
for 'svalue'
histogramAndDensity : addDensity: no visible binding for global
variable 'x'
histogramAndDensity: no visible global function definition for
'gdroplist'
histogramAndDensity: no visible global function definition for
'addhandlerchanged'
histogramAndDensity : <anonymous>: no visible global function
definition for 'svalue'
histogramAndDensity : <anonymous>: no visible global function
definition for 'svalue<-'
histogramAndDensity : <anonymous>: no visible global function
definition for 'enabled<-'
histogramAndDensity: no visible global function definition for 'gradio'
histogramAndDensity: no visible global function definition for
'gcheckbox'
histogramAndDensity: no visible global function definition for 'glabel'
histogramAndDensity: no visible global function definition for 'gedit'
histogramAndDensity: no visible global function definition for 'ggroup'
histogramAndDensity: no visible global function definition for 'gframe'
histogramAndDensity: no visible global function definition for
'glayout'
histogramAndDensity: no visible global function definition for
'visible<-'
histogramAndDensity: no visible global function definition for 'add'
histogramAndDensity: no visible global function definition for
'addSpring'
histogramAndDensity: no visible global function definition for
'gbutton'
histogramAndDensity : <anonymous>: no visible global function
definition for 'dispose'
histogramAndDensity: no visible global function definition for
'ggraphics'
importFile : <anonymous>: no visible binding for global variable
'svalue'
importFile : <anonymous>: no visible global function definition for
'svalue'
importFile : <anonymous>: no visible global function definition for
'gconfirm'
importFile : <anonymous>: no visible global function definition for
'dispose'
importFile : <anonymous>: no visible global function definition for
'gedit'
importFile : <anonymous>: no visible global function definition for
'ggroup'
importFile : <anonymous>: no visible global function definition for
'glabel'
importFile : <anonymous>: no visible global function definition for
'glayout'
importFile : <anonymous>: no visible global function definition for
'visible<-'
importFile : <anonymous>: no visible global function definition for
'gframe'
importFile : <anonymous>: no visible global function definition for
'gdroplist'
importFile : <anonymous>: no visible global function definition for
'gspinbutton'
importFile : <anonymous> : makePreview: no visible binding for global
variable 'svalue'
importFile : <anonymous> : makePreview: no visible global function
definition for 'delete'
importFile : <anonymous> : makePreview: no visible global function
definition for 'ggroup'
importFile : <anonymous> : makePreview: no visible global function
definition for 'gdf'
importFile : <anonymous> : <anonymous>: no visible global function
definition for 'addHandlerChanged'
lsDatasets: no visible global function definition for '.GlobalEnv'
lsFunctions: no visible global function definition for '.GlobalEnv'
lsModels: no visible global function definition for '.GlobalEnv'
lsTs: no visible global function definition for '.GlobalEnv'
mcaGUI: no visible global function definition for 'size<-'
mcaGUI: no visible global function definition for 'gmenu'
mcaGUI: no visible global function definition for 'gnotebook'
mcaGUI: no visible global function definition for 'gstatusbar'
mcaGUI: no visible global function definition for 'ggroup'
mcaGUI: no visible global function definition for 'add'
mcaGUI: no visible binding for global variable 'pmg.user.menu'
mcaGUI: no visible binding for global variable 'pmg.menubar'
mcaGUI: no visible global function definition for 'gvarbrowser'
mcaGUI : <anonymous>: no visible global function definition for
'svalue'
mcaGUI : <anonymous>: no visible global function definition for 'add'
mcaGUI: no visible global function definition for 'gexpandgroup'
mcaGUI: no visible global function definition for 'visible<-'
mcaGUI: no visible global function definition for 'gpanedgroup'
mcaGUI : <anonymous>: no visible global function definition for
'dispose'
mcaGUI : <anonymous>: no visible global function definition for 'gfile'
mcaGUI : <anonymous>: no visible global function definition for
'ggraphicsnotebook'
mcaGUI : <anonymous>: no visible global function definition for
'focus<-'
mcaGUI : <anonymous>: no visible global function definition for
'ghelpbrowser'
mcaGUI: no visible global function definition for 'gtoolbar'
mcaGUI: no visible global function definition for 'gimage'
mcaGUI: no visible global function definition for 'addSpace'
mcaGUI: no visible global function definition for 'gseparator'
mcaGUI: no visible global function definition for 'addSpring'
mcaGUI: no visible global function definition for 'adddroptarget'
mcaGUI : <anonymous>: no visible global function definition for
'svalue<-'
mcaGUI: no visible binding for '<<-' assignment to 'send'
mcaGUI: no visible global function definition for 'gcommandline'
mcaGUI : pmg.data.frame.viewer.nb: no visible global function
definition for 'gtext'
panel.mean: no visible global function definition for 'panel.abline'
panel.median: no visible global function definition for 'panel.abline'
pmg.about: no visible global function definition for 'ggroup'
pmg.about: no visible global function definition for 'size<-'
pmg.about: no visible global function definition for 'glabel'
pmg.about: no visible global function definition for 'addSpring'
pmg.about: no visible global function definition for 'gbutton'
pmg.about.R: no visible global function definition for 'ggroup'
pmg.about.R: no visible global function definition for 'gimage'
pmg.about.R: no visible global function definition for 'glabel'
pmg.add: no visible global function definition for 'add'
pmg.addMenubar: no visible global function definition for 'add'
pmg.castGUI: no visible global function definition for 'ggroup'
pmg.castGUI: no visible global function definition for 'gedit'
pmg.castGUI: no visible global function definition for 'gtable'
pmg.castGUI: no visible global function definition for 'adddropsource'
pmg.castGUI : <anonymous>: no visible global function definition for
'svalue'
pmg.castGUI: no visible global function definition for 'glabel'
pmg.castGUI: no visible global function definition for 'font<-'
pmg.castGUI: no visible global function definition for 'gdroplist'
pmg.castGUI: no visible global function definition for 'gbutton'
pmg.castGUI: no visible global function definition for 'glayout'
pmg.castGUI: no visible global function definition for 'visible<-'
pmg.castGUI: no visible global function definition for 'add'
pmg.castGUI: no visible global function definition for 'gseparator'
pmg.castGUI: no visible global function definition for 'gexpandgroup'
pmg.castGUI : getCast: no visible global function definition for
'svalue'
pmg.castGUI : cleanPreview: no visible global function definition for
'delete'
pmg.castGUI : cleanPreview: no visible global function definition for
'glabel'
pmg.castGUI : cleanPreview: no visible global function definition for
'add'
pmg.castGUI: no visible global function definition for
'addhandlerchanged'
pmg.castGUI : <anonymous>: no visible global function definition for
'gmessage'
pmg.castGUI : <anonymous>: no visible global function definition for
'svalue<-'
pmg.castGUI : formulaDropHandler: no visible global function definition
for 'svalue'
pmg.castGUI : formulaDropHandler: no visible global function definition
for 'svalue<-'
pmg.castGUI: no visible global function definition for 'adddroptarget'
pmg.castGUI : updateHandler: no visible global function definition for
'gmessage'
pmg.castGUI : updateHandler: no visible global function definition for
'delete'
pmg.castGUI : updateHandler: no visible global function definition for
'gtable'
pmg.castGUI : updateHandler: no visible global function definition for
'add'
pmg.castGUI : updateHandler: no visible global function definition for
'enabled<-'
pmg.castGUI : clearFormulaHandler: no visible global function
definition for 'svalue<-'
pmg.castGUI : clearFormulaHandler: no visible global function
definition for 'delete'
pmg.castGUI : clearFormulaHandler: no visible global function
definition for 'glabel'
pmg.castGUI : clearFormulaHandler: no visible global function
definition for 'add'
pmg.castGUI : editSubsetHandler: no visible global function definition
for 'svalue'
pmg.castGUI : editSubsetHandler: no visible global function definition
for 'gmessage'
pmg.castGUI : editSubsetHandler: no visible global function definition
for 'editSubsetDialog'
pmg.castGUI : saveAsHandler: no visible global function definition for
'gmessage'
pmg.castGUI : saveAsHandler: no visible global function definition for
'svalue'
pmg.castGUI : saveAsHandler: no visible global function definition for
'gconfirm'
pmg.castGUI : saveAsHandler: no visible global function definition for
'enabled<-'
pmg.chooseCRANmirror: no visible global function definition for
'size<-'
pmg.chooseCRANmirror: no visible global function definition for
'ggroup'
pmg.chooseCRANmirror: no visible global function definition for
'gtable'
pmg.chooseCRANmirror : <anonymous>: no visible global function
definition for 'svalue'
pmg.chooseCRANmirror : <anonymous>: no visible global function
definition for 'dispose'
pmg.chooseCRANmirror: no visible global function definition for 'add'
pmg.chooseCRANmirror: no visible global function definition for
'gstatusbar'
pmg.chooseCRANmirror: no visible global function definition for
'visible<-'
pmg.closeAll: no visible global function definition for 'dispose'
pmg.edit.dataframe.properties.dialog: no visible global function
definition for 'ggroup'
pmg.edit.dataframe.properties.dialog: no visible global function
definition for 'add'
pmg.edit.dataframe.properties.dialog: no visible global function
definition for 'glabel'
pmg.edit.dataframe.properties.dialog: no visible global function
definition for 'gseparator'
pmg.edit.dataframe.properties.dialog: no visible global function
definition for 'glayout'
pmg.edit.dataframe.properties.dialog : selHandler: no visible global
function definition for 'svalue'
pmg.edit.dataframe.properties.dialog: no visible global function
definition for 'gdroplist'
pmg.edit.dataframe.properties.dialog: no visible global function
definition for 'gbutton'
pmg.edit.dataframe.properties.dialog: no visible global function
definition for 'visible<-'
pmg.eval: no visible global function definition for 'svalue<-'
pmg.gw: no visible global function definition for 'ggenericwidget'
pmg.gw: no visible global function definition for 'ggroup'
pmg.gw: no visible global function definition for 'add'
pmg.help: no visible global function definition for 'ghelpbrowser'
pmg.help: no visible global function definition for 'focus<-'
pmg.help: no visible global function definition for 'add'
pmg.installCRANPackage : addPackageList: no visible global function
definition for 'svalue<-'
pmg.installCRANPackage : addPackageList: no visible global function
definition for 'svalue'
pmg.installCRANPackage : addPackageList: no visible global function
definition for 'enabled<-'
pmg.installCRANPackage: no visible global function definition for
'ggroup'
pmg.installCRANPackage: no visible global function definition for
'glayout'
pmg.installCRANPackage: no visible global function definition for
'glabel'
pmg.installCRANPackage: no visible global function definition for
'gedit'
pmg.installCRANPackage : <anonymous>: no visible global function
definition for 'svalue'
pmg.installCRANPackage: no visible global function definition for
'gbutton'
pmg.installCRANPackage: no visible global function definition for
'addhandlerclicked'
pmg.installCRANPackage : <anonymous>: no visible global function
definition for 'svalue<-'
pmg.installCRANPackage: no visible global function definition for
'gdroplist'
pmg.installCRANPackage : <anonymous>: no visible global function
definition for 'gfile'
pmg.installCRANPackage : <anonymous> : <anonymous>: no visible global
function definition for 'svalue<-'
pmg.installCRANPackage : <anonymous> : <anonymous>: no visible global
function definition for 'svalue'
pmg.installCRANPackage: no visible global function definition for
'gstatusbar'
pmg.installCRANPackage: no visible global function definition for
'enabled<-'
pmg.installCRANPackage : <anonymous>: no visible global function
definition for 'dispose'
pmg.installCRANPackage: no visible global function definition for 'add'
pmg.installCRANPackage: no visible global function definition for
'gtable'
pmg.installCRANPackage: no visible global function definition for
'size<-'
pmg.installCRANPackage: no visible global function definition for
'visible<-'
pmg.installCRANPackage: no visible global function definition for
'gseparator'
pmg.installCRANPackage: no visible global function definition for
'addSpring'
pmg.iplots: no visible global function definition for 'ggroup'
pmg.iplots : <anonymous>: no visible global function definition for
'dispose'
pmg.iplots: no visible global function definition for 'gtoolbar'
pmg.iplots: no visible global function definition for 'gnotebook'
pmg.iplots: no visible global function definition for 'add'
pmg.iplots: no visible global function definition for 'size<-'
pmg.iplots : addNewDF: no visible global function definition for
'ggroup'
pmg.iplots : addNewDF: no visible global function definition for 'add'
pmg.iplots : addNewDF: no visible global function definition for
'glabel'
pmg.iplots : addNewDF: no visible global function definition for
'gtable'
pmg.iplots : addNewDF: no visible global function definition for
'addhandlerdoubleclick'
pmg.iplots : addNewDF : <anonymous>: no visible global function
definition for 'svalue'
pmg.iplots : addNewDF : <anonymous>: no visible global function
definition for 'add'
pmg.iplots : addNewDF : <anonymous>: no visible global function
definition for 'dispose'
pmg.iplots : addNewDF: no visible global function definition for
'gmessage'
pmg.loadPackages: no visible global function definition for 'size<-'
pmg.loadPackages: no visible global function definition for 'ggroup'
pmg.loadPackages : packageHandler: no visible global function
definition for 'svalue'
pmg.loadPackages : packageHandler: no visible global function
definition for 'svalue<-'
pmg.loadPackages: no visible global function definition for 'gtable'
pmg.loadPackages: no visible global function definition for 'addSpring'
pmg.loadPackages: no visible global function definition for 'gbutton'
pmg.loadPackages : <anonymous>: no visible global function definition
for 'dispose'
pmg.loadPackages: no visible global function definition for
'gstatusbar'
pmg.meltGUI : getMeltedObject: no visible global function definition
for 'svalue'
pmg.meltGUI : getMeltedObject: no visible global function definition
for 'gmessage'
pmg.meltGUI: no visible global function definition for 'ggroup'
pmg.meltGUI: no visible global function definition for 'glabel'
pmg.meltGUI: no visible global function definition for 'glayout'
pmg.meltGUI: no visible global function definition for 'gedit'
pmg.meltGUI: no visible global function definition for 'gtable'
pmg.meltGUI: no visible global function definition for 'size<-'
pmg.meltGUI: no visible global function definition for 'gdroplist'
pmg.meltGUI: no visible global function definition for 'gbutton'
pmg.meltGUI: no visible global function definition for 'visible<-'
pmg.meltGUI: no visible global function definition for 'add'
pmg.meltGUI: no visible global function definition for 'gseparator'
pmg.meltGUI: no visible global function definition for 'gexpandgroup'
pmg.meltGUI: no visible global function definition for 'enabled<-'
pmg.meltGUI: no visible global function definition for
'addhandlerchanged'
pmg.meltGUI : <anonymous>: no visible global function definition for
'svalue'
pmg.meltGUI : <anonymous>: no visible global function definition for
'gmessage'
pmg.meltGUI : <anonymous>: no visible global function definition for
'svalue<-'
pmg.meltGUI : <anonymous>: no visible global function definition for
'delete'
pmg.meltGUI : <anonymous>: no visible global function definition for
'gtable'
pmg.meltGUI : <anonymous>: no visible global function definition for
'add'
pmg.meltGUI : <anonymous>: no visible global function definition for
'enabled<-'
pmg.meltGUI : handler: no visible global function definition for
'svalue'
pmg.meltGUI : handler: no visible global function definition for
'gmessage'
pmg.meltGUI : handler: no visible global function definition for
'gconfirm'
pmg.meltGUI : handler: no visible global function definition for
'enabled<-'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'ggroup'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'glayout'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'gfilebrowse'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'glabel'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'font<-'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'gseparator'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'gedit'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'gdroplist'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'visible<-'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'svalue'
pmg.specifyFileForImport : <anonymous>: no visible global function
definition for 'dispose'
pmg.subset.dialog: no visible global function definition for 'ggroup'
pmg.subset.dialog: no visible global function definition for 'gframe'
pmg.subset.dialog: no visible global function definition for 'glayout'
pmg.subset.dialog: no visible global function definition for 'glabel'
pmg.subset.dialog: no visible global function definition for 'gedit'
pmg.subset.dialog: no visible global function definition for 'gbutton'
pmg.subset.dialog : <anonymous>: no visible global function definition
for 'editSubsetDialog'
pmg.subset.dialog : <anonymous>: no visible global function definition
for 'svalue'
pmg.subset.dialog : <anonymous>: no visible global function definition
for 'editSelectDialog'
pmg.subset.dialog: no visible global function definition for 'gradio'
pmg.subset.dialog : <anonymous>: no visible global function definition
for 'svalue<-'
pmg.subset.dialog: no visible global function definition for 'add'
pmg.subset.dialog: no visible global function definition for
'visible<-'
pmg.viewDataSets: no visible global function definition for 'size<-'
pmg.viewDataSets: no visible global function definition for 'ggroup'
pmg.viewDataSets : dataSetHandler: no visible global function
definition for 'svalue'
pmg.viewDataSets : dataSetHandler: no visible global function
definition for 'svalue<-'
pmg.viewDataSets: no visible global function definition for 'gtable'
pmg.viewDataSets: no visible global function definition for 'add'
pmg.viewDataSets: no visible global function definition for 'addSpring'
pmg.viewDataSets: no visible global function definition for 'gbutton'
pmg.viewDataSets : <anonymous>: no visible global function definition
for 'dispose'
pmg.viewDataSets: no visible global function definition for
'gstatusbar'
pmgIplotInstructions: no visible global function definition for 'gtext'
pmgIplotInstructions: no visible global function definition for 'add'
pmgSummary.default: no visible global function definition for 'svalue'
pmgSummary.default: no visible global function definition for 'ggroup'
pmgSummary.default: no visible global function definition for
'stockIconFromClass'
pmgSummary.default: no visible global function definition for 'add'
pmgSummary.default: no visible global function definition for 'gimage'
pmgSummary.default: no visible global function definition for 'glayout'
pmgSummary.default: no visible global function definition for 'glabel'
pmgSummary.default: no visible global function definition for
'svalue<-'
pmgSummary.default: no visible global function definition for 'gdf'
pmgSummary.default: no visible global function definition for 'gtext'
pmgSummary.default: no visible global function definition for
'enabled<-'
pmgSummary.default: no visible global function definition for
'visible<-'
principle_component: no visible global function definition for 'bpca'
probabilityCalculator: no visible global function definition for
'gwindow'
probabilityCalculator : initOptions: no visible global function
definition for 'svalue'
probabilityCalculator : initOptions: no visible global function
definition for 'svalue<-'
probabilityCalculator : updatePlot: no visible global function
definition for 'svalue'
probabilityCalculator : updatePlot: no visible global function
definition for 'svalue<-'
probabilityCalculator : updatePlot: no visible binding for global
variable 'x'
probabilityCalculator: no visible global function definition for
'gdroplist'
probabilityCalculator: no visible global function definition for
'addhandlerchanged'
probabilityCalculator : <anonymous>: no visible global function
definition for 'svalue'
probabilityCalculator : <anonymous>: no visible global function
definition for 'svalue<-'
probabilityCalculator : <anonymous>: no visible global function
definition for 'enabled<-'
probabilityCalculator: no visible global function definition for
'gradio'
probabilityCalculator: no visible global function definition for
'glabel'
probabilityCalculator: no visible global function definition for
'gedit'
probabilityCalculator: no visible global function definition for
'ggroup'
probabilityCalculator: no visible global function definition for
'gframe'
probabilityCalculator: no visible global function definition for
'glayout'
probabilityCalculator: no visible global function definition for
'visible<-'
probabilityCalculator: no visible global function definition for 'add'
probabilityCalculator: no visible global function definition for
'addSpring'
probabilityCalculator: no visible global function definition for
'gbutton'
probabilityCalculator : <anonymous>: no visible global function
definition for 'dispose'
probabilityCalculator: no visible global function definition for
'ggraphics'
qplotGUI : getValueFromString: no visible global function definition
for 'svalue'
qplotGUI: no visible global function definition for 'gnotebook'
qplotGUI: no visible global function definition for 'ggroup'
qplotGUI: no visible global function definition for 'glayout'
qplotGUI: no visible global function definition for 'gdroplist'
qplotGUI: no visible global function definition for 'gedit'
qplotGUI: no visible global function definition for 'gseparator'
qplotGUI: no visible global function definition for 'gtable'
qplotGUI: no visible global function definition for 'size<-'
qplotGUI: no visible global function definition for 'glabel'
qplotGUI: no visible global function definition for 'gbutton'
qplotGUI : <anonymous>: no visible global function definition for
'svalue'
qplotGUI: no visible global function definition for 'visible<-'
qplotGUI: no visible global function definition for 'svalue<-'
qplotGUI : updateGeoms: no visible global function definition for
'svalue'
qplotGUI : updateExtraArgs: no visible global function definition for
'svalue'
qplotGUI : updateExtraArgs: no visible global function definition for
'svalue<-'
qplotGUI : updateExtraArgs: no visible global function definition for
'dispose'
qplotGUI : updateExtraArgs: no visible global function definition for
'ggroup'
qplotGUI : updateExtraArgs: no visible global function definition for
'glabel'
qplotGUI : updateExtraArgs: no visible global function definition for
'gdroplist'
qplotGUI : updateExtraArgs: no visible global function definition for
'gedit'
qplotGUI : getExtraArgValues: no visible global function definition for
'svalue'
qplotGUI : updateGraphic: no visible binding for global variable
'svalue'
qplotGUI : updateGraphic.paste: no visible binding for global variable
'svalue'
qplotGUI : <anonymous>: no visible global function definition for
'addHandlerChanged'
qplotGUI: no visible global function definition for 'addHandlerClicked'
qplotGUI: no visible global function definition for 'addHandlerChanged'
qplotGUI: no visible global function definition for 'addDropTarget'
quantileWidget: no visible global function definition for 'ggroup'
quantileWidget: no visible global function definition for 'tag<-'
quantileWidget: no visible global function definition for 'gimage'
quantileWidget: no visible global function definition for 'gseparator'
quantileWidget: no visible global function definition for 'glayout'
quantileWidget: no visible global function definition for 'glabel'
quantileWidget: no visible global function definition for 'font<-'
quantileWidget: no visible global function definition for 'gdroplist'
quantileWidget: no visible global function definition for 'add'
quantileWidget: no visible global function definition for 'visible<-'
quantileWidget: no visible global function definition for 'gtext'
quantileWidget: no visible global function definition for
'addhandlerchanged'
quantileWidget : <anonymous>: no visible global function definition for
'tag'
quantileWidget : <anonymous>: no visible global function definition for
'removehandler'
quantileWidget : <anonymous>: no visible global function definition for
'tag<-'
quantileWidget : <anonymous>: no visible global function definition for
'svalue'
quantileWidget: no visible global function definition for
'adddroptarget'
quantileWidget : <anonymous>: no visible global function definition for
'svalue<-'
quantileWidget : <anonymous>: no visible global function definition for
'addhandlerchanged'
quantileWidget : update: no visible global function definition for
'svalue'
quantileWidget : update: no visible global function definition for
'tag'
quantileWidget : update: no visible global function definition for
'svalue<-'
quantileWidget : update: no visible global function definition for
'dispose'
quantileWidget : update: no visible global function definition for
'add'
repeatTrialsGUI: no visible global function definition for 'gframe'
repeatTrialsGUI: no visible global function definition for 'glayout'
repeatTrialsGUI: no visible global function definition for 'gedit'
repeatTrialsGUI: no visible global function definition for 'gseparator'
repeatTrialsGUI: no visible global function definition for 'gdroplist'
repeatTrialsGUI: no visible global function definition for 'ggroup'
repeatTrialsGUI: no visible global function definition for 'gbutton'
repeatTrialsGUI: no visible global function definition for 'addSpace'
repeatTrialsGUI : <anonymous>: no visible global function definition
for 'ghelp'
repeatTrialsGUI: no visible global function definition for 'visible<-'
repeatTrialsGUI: no visible global function definition for
'addHandlerClicked'
repeatTrialsGUI : <anonymous>: no visible global function definition
for 'svalue'
richness : <anonymous>: no visible global function definition for
'estimateR'
selectFile: no visible global function definition for 'gfile'
updateLatticeOptions: no visible global function definition for 'tag'
updateLatticeOptions: no visible global function definition for
'svalue<-'
updateLatticeOptions: no visible global function definition for 'tag<-'
updatePanel: no visible global function definition for 'tag'
updatedLatticeExplorer: no visible global function definition for 'tag'
updatedLatticeExplorer : <anonymous>: no visible global function
definition for 'id'
updatedLatticeExplorer : <anonymous>: no visible global function
definition for 'svalue'
updatedLatticeExplorer: no visible global function definition for
'svalue'
updatedLatticeExplorer: no visible global function definition for
'shingle'
viewDemos.Dialog: no visible global function definition for 'gtable'
viewDemos.Dialog: no visible global function definition for
'addhandlerdoubleclick'
viewDemos.Dialog : <anonymous>: no visible global function definition
for 'svalue'
viewDemos.Dialog: no visible global function definition for 'ggroup'
viewDemos.Dialog: no visible global function definition for 'add'
viewDemos.Dialog: no visible global function definition for 'addSpring'
viewDemos.Dialog: no visible global function definition for 'gbutton'
viewDemos.Dialog : <anonymous>: no visible global function definition
for 'dispose'
viewDemos.Dialog: no visible global function definition for 'size<-'
viewVignettes.Dialog : defaultHandler: no visible global function
definition for 'svalue'
viewVignettes.Dialog: no visible global function definition for
'gtable'
viewVignettes.Dialog: no visible global function definition for
'ggroup'
viewVignettes.Dialog: no visible global function definition for 'add'
viewVignettes.Dialog: no visible global function definition for
'addSpring'
viewVignettes.Dialog: no visible global function definition for
'gbutton'
viewVignettes.Dialog : <anonymous>: no visible global function
definition for 'dispose'
viewVignettes.Dialog: no visible global function definition for
'size<-'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
** running examples for arch 'x64' ... [13s] OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'E:/biocbld/bbs-3.1-bioc/meat/mcaGUI.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'mcaGUI' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
Note: the specification for class ".ShortReadBase" in package 'OTUbase' seems equivalent to one from package 'ShortRead': not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
Note: the specification for class ".ShortReadBase" in package 'OTUbase' seems equivalent to one from package 'ShortRead': not turning on duplicate class definitions for this class.
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to: "
[1] ""
GUI requires an interactive environment
install for x64
* installing *source* package 'mcaGUI' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
Note: the specification for class ".ShortReadBase" in package 'OTUbase' seems equivalent to one from package 'ShortRead': not turning on duplicate class definitions for this class.
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to: "
[1] ""
GUI requires an interactive environment
* MD5 sums
packaged installation of 'mcaGUI' as mcaGUI_1.16.0.zip
* DONE (mcaGUI)