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BioC 3.1: BUILD report for flowPhyto on morelia

This page was generated on 2015-02-07 09:08:09 -0800 (Sat, 07 Feb 2015).

Package 324/968HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPhyto 1.19.0
Chris Berthiaume
Snapshot Date: 2015-02-06 17:20:30 -0800 (Fri, 06 Feb 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowPhyto
Last Changed Rev: 95443 / Revision: 99170
Last Changed Date: 2014-10-13 14:47:41 -0700 (Mon, 13 Oct 2014)
zin2 Linux (Ubuntu 14.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: flowPhyto
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPhyto
StartedAt: 2015-02-06 19:52:46 -0800 (Fri, 06 Feb 2015)
EndedAt: 2015-02-06 19:54:43 -0800 (Fri, 06 Feb 2015)
EllapsedTime: 117.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPhyto
###
##############################################################################
##############################################################################


* checking for file ‘flowPhyto/DESCRIPTION’ ... OK
* preparing ‘flowPhyto’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init

Attaching package: ‘flowPhyto’

The following object is masked from ‘package:stats’:

    filter

Warning in readBin(con, integer(), n = 1, size = n.bytes.header, signed = FALSE,  :
  'signed = FALSE' is only valid for integers of sizes 1 and 2
Warning in readBin(con, integer(), n = 1, size = n.bytes.EOL, signed = FALSE,  :
  'signed = FALSE' is only valid for integers of sizes 1 and 2
Warning in readBin(con, integer(), n = 1, size = n.bytes.header, signed = FALSE,  :
  'signed = FALSE' is only valid for integers of sizes 1 and 2
Warning in readBin(con, integer(), n = 1, size = n.bytes.EOL, signed = FALSE,  :
  'signed = FALSE' is only valid for integers of sizes 1 and 2
Warning: Quick-TRANSfer stage steps exceeded maximum (= 239050)

Error: processing vignette 'flowPhyto.Rnw' failed with diagnostics:
 chunk 7 (label = classify1) 
Error in initialize(value, ...) : object 'Line1' not found
Execution halted