BioC 3.1: CHECK report for flowFlowJo on zin2

Package: flowFlowJo

Version: 1.25.0

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings flowFlowJo_1.25.0.tar.gz

StartedAt: 2015-03-20 00:36:47 -0700 (Fri, 20 Mar 2015)

EndedAt: 2015-03-20 00:37:39 -0700 (Fri, 20 Mar 2015)

EllapsedTime: 51.9 seconds

RetCode: 0

Status:  OK

CheckDir: flowFlowJo.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings flowFlowJo_1.25.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/flowFlowJo.Rcheck’
* using R Under development (unstable) (2015-03-08 r67960)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowFlowJo/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowFlowJo’ version ‘1.25.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowFlowJo’ can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘MASS’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘flowFlowJo/R/zzz.R’:
  .onLoad calls:
    packageStartupMessage(msg)

See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [10s/10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.1-bioc/meat/flowFlowJo.Rcheck/00check.log’
for details.

* installing *source* package ‘flowFlowJo’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowFlowJo)

name	user	system	elapsed
collectSummaryFlowInfo	2.992	0.016	3.010
createFlowReport	2.949	0.003	2.956
flowFlowJo-package	0.434	0.000	0.439
getFlowJoGates	0.488	0.000	0.491
getFlowJoSummary	0.495	0.000	0.495
readFlowJoList	0.469	0.008	0.477
simplifyGateNames	0.001	0.000	0.001