csaw 1.2.1
Aaron Lun
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/csaw | | Last Changed Rev: 103855 / Revision: 109384 | | Last Changed Date: 2015-05-14 17:37:15 -0700 (Thu, 14 May 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD INSTALL csaw
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.1-bioc/R/library’
* installing *source* package ‘csaw’ ...
** libs
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c annotator.cpp -o annotator.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c best_in_cluster.cpp -o best_in_cluster.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c correlate_reads.cpp -o correlate_reads.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c find_maxima.cpp -o find_maxima.o
find_maxima.cpp: In function ‘SEXPREC* find_maxima(SEXP, SEXP, SEXP, SEXP, SEXP)’:
find_maxima.cpp:86:4: warning: ‘is_max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
while (right_copy >= is_max) {
^
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c get_cluster_stats.cpp -o get_cluster_stats.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c get_profile.cpp -o get_profile.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c get_rle_counts.cpp -o get_rle_counts.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c init.cpp -o init.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c merge_windows.cpp -o merge_windows.o
g++ -shared -L/home/biocbuild/bbs-3.1-bioc/R/lib -L/usr/local/lib -o csaw.so annotator.o best_in_cluster.o correlate_reads.o find_maxima.o get_cluster_stats.o get_profile.o get_rle_counts.o init.o merge_windows.o -L/home/biocbuild/bbs-3.1-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.1-bioc/R/library/csaw/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** installing vignettes
‘csaw.Rnw’
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (csaw)