BioC 3.1: CHECK report for antiProfiles on moscato2

Package: antiProfiles

Version: 1.8.0

Command: rm -rf antiProfiles.buildbin-libdir antiProfiles.Rcheck && mkdir antiProfiles.buildbin-libdir antiProfiles.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=antiProfiles.buildbin-libdir antiProfiles_1.8.0.tar.gz >antiProfiles.Rcheck\00install.out 2>&1 && cp antiProfiles.Rcheck\00install.out antiProfiles-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=antiProfiles.buildbin-libdir --install="check:antiProfiles-install.out" --force-multiarch --no-vignettes --timings antiProfiles_1.8.0.tar.gz

StartedAt: 2015-10-08 23:21:49 -0700 (Thu, 08 Oct 2015)

EndedAt: 2015-10-08 23:22:38 -0700 (Thu, 08 Oct 2015)

EllapsedTime: 49.0 seconds

RetCode: 0

Status:  OK

CheckDir: antiProfiles.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf antiProfiles.buildbin-libdir antiProfiles.Rcheck && mkdir antiProfiles.buildbin-libdir antiProfiles.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=antiProfiles.buildbin-libdir antiProfiles_1.8.0.tar.gz >antiProfiles.Rcheck\00install.out 2>&1 && cp antiProfiles.Rcheck\00install.out antiProfiles-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=antiProfiles.buildbin-libdir --install="check:antiProfiles-install.out" --force-multiarch --no-vignettes --timings antiProfiles_1.8.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/antiProfiles.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'antiProfiles/DESCRIPTION' ... OK
* this is package 'antiProfiles' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'antiProfiles' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'matrixStats' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
antiprofile-class 0.61   0.05    7.24
** running examples for arch 'x64' ... [3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.1-bioc/meat/antiProfiles.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'antiProfiles' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'antiProfiles' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'antiProfiles' as antiProfiles_1.8.0.zip
* DONE (antiProfiles)

name	user	system	elapsed
antiprofile-class	0.61	0.05	7.24
antiprofilestats-class	0.36	0.03	0.39
apCount-methods	0.21	0.00	0.22
apReorder-methods	0.22	0.00	0.22
apStats	0.20	0.01	0.22
buildAntiProfile-methods	0.20	0.02	0.22
tissueSpecAntiprofile-class	0.25	0.02	0.26

name	user	system	elapsed
antiprofile-class	0.78	0.02	0.81
antiprofilestats-class	0.36	0.03	0.39
apCount-methods	0.22	0.01	0.23
apReorder-methods	0.24	0.00	0.23
apStats	0.17	0.05	0.22
buildAntiProfile-methods	0.22	0.02	0.24
tissueSpecAntiprofile-class	0.26	0.01	0.28