affy 1.46.1
Rafael A. Irizarry
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/affy | | Last Changed Rev: 104755 / Revision: 109384 | | Last Changed Date: 2015-06-09 13:45:33 -0700 (Tue, 09 Jun 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | WARNINGS | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | WARNINGS | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.1/bioc/src/contrib/affy_1.46.1.tar.gz && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch affy_1.46.1.tar.gz && rm affy_1.46.1.tar.gz
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install for i386
* installing to library 'E:/biocbld/bbs-3.1-bioc/R/library'
* installing *source* package 'affy' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m32 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
gcc -m32 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c getall_locations.c -o getall_locations.o
gcc -m32 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
gcc -m32 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
gcc -m32 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
gcc -m32 -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LE:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LE:/biocbld/BBS-3˜1.1-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.1-bioc/R/library/affy/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'open' from package 'base' in package 'affy'
Creating a generic function for 'close' from package 'base' in package 'affy'
Creating a generic function for 'barplot' from package 'graphics' in package 'affy'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'E:/biocbld/bbs-3.1-bioc/R/library'
* installing *source* package 'affy' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m64 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
gcc -m64 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c getall_locations.c -o getall_locations.o
gcc -m64 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
gcc -m64 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
gcc -m64 -I"E:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.1-bioc/R/library/preprocessCore/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
gcc -m64 -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LE:/biocbld/bbs-3.1-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LE:/biocbld/BBS-3˜1.1-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.1-bioc/R/library/affy/libs/x64
** testing if installed package can be loaded
* DONE (affy)