BioC 3.1: CHECK report for UNDO on zin2
This page was generated on 2015-10-09 09:26:01 -0700 (Fri, 09 Oct 2015).
UNDO 1.10.0 Niya Wang
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/UNDO | Last Changed Rev: 102591 / Revision: 109384 | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
Summary
Package: UNDO |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings UNDO_1.10.0.tar.gz |
StartedAt: 2015-10-09 06:12:01 -0700 (Fri, 09 Oct 2015) |
EndedAt: 2015-10-09 06:12:29 -0700 (Fri, 09 Oct 2015) |
EllapsedTime: 27.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: UNDO.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings UNDO_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/UNDO.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘UNDO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘UNDO’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘UNDO’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [5s/5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
UNDO.Rcheck/00install.out:
* installing *source* package ‘UNDO’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (UNDO)
UNDO.Rcheck/UNDO-Ex.timings:
name | user | system | elapsed
|
BiologicalMixMCF7HS27 | 0.099 | 0.004 | 0.104 |
|
NumericalMixMCF7HS27 | 0.100 | 0.003 | 0.104 |
|
NumericalMixingMatrix | 0.003 | 0.001 | 0.003 |
|
PureMCF7HS27 | 0.123 | 0.000 | 0.122 |
|
UNDO-package | 1.426 | 0.004 | 1.437 |
|
calc_E1 | 0.001 | 0.000 | 0.001 |
|
dimension_reduction | 0.002 | 0.000 | 0.002 |
|
gene_expression_input | 0.001 | 0.000 | 0.001 |
|
marker_gene_selection | 0.11 | 0.00 | 0.11 |
|
mixing_matrix_computation | 0.478 | 0.000 | 0.478 |
|
two_source_deconv | 1.463 | 0.007 | 1.481 |
|