SwimR 1.6.0
Randy Blakely
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/SwimR | | Last Changed Rev: 102591 / Revision: 109384 | | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf SwimR.buildbin-libdir SwimR.Rcheck && mkdir SwimR.buildbin-libdir SwimR.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SwimR.buildbin-libdir SwimR_1.6.0.tar.gz >SwimR.Rcheck\00install.out 2>&1 && cp SwimR.Rcheck\00install.out SwimR-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=SwimR.buildbin-libdir --install="check:SwimR-install.out" --force-multiarch --no-vignettes --timings SwimR_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/SwimR.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SwimR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SwimR' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SwimR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
'R2HTML' 'gplots' 'heatmap.plus' 'signal'
Please remove these calls from your code.
Namespace in Imports field not imported from: 'methods'
All declared Imports should be used.
Packages in Depends field not imported from:
'R2HTML' 'gplots' 'heatmap.plus' 'methods' 'signal'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
SwimR: no visible global function definition for 'colorpanel'
SwimR: no visible global function definition for 'heatmap.plus'
SwimR: no visible global function definition for 'HTMLInitFile'
SwimR: no visible global function definition for 'HTML'
SwimR: no visible global function definition for 'HTMLEndFile'
createFrequencyMatrix : FrequencyAnalysis: no visible global function
definition for 'fir1'
createFrequencyMatrix : FrequencyAnalysis: no visible global function
definition for 'as.Arma'
createFrequencyMatrix : FrequencyAnalysis: no visible global function
definition for 'hamming'
createFrequencyMatrix: no visible global function definition for
'HTMLInitFile'
createFrequencyMatrix: no visible global function definition for 'HTML'
createFrequencyMatrix: no visible global function definition for
'HTMLEndFile'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [36s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
createFrequencyMatrix 21.22 2.31 24.05
SwimR 10.03 0.56 10.66
** running examples for arch 'x64' ... [30s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
createFrequencyMatrix 17.24 2.09 20.11
SwimR 8.39 0.36 8.81
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'E:/biocbld/bbs-3.1-bioc/meat/SwimR.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'SwimR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'SwimR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SwimR' as SwimR_1.6.0.zip
* DONE (SwimR)