| Back to the "Multiple platform build/check report" | A B C D E F G H I J K L M N O P Q [R] S T U V W X Y Z |
This page was generated on 2015-10-09 09:29:53 -0700 (Fri, 09 Oct 2015).
| Package 828/1024 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| RMassBank 1.10.0 RMassBank at Eawag
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | ERROR | skipped | ||||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | ||||||
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | ERROR | skipped | skipped | ||||||
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | ERROR | skipped | skipped |
| Package: RMassBank |
| Version: 1.10.0 |
| Command: chmod a+r RMassBank -R && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RMassBank |
| StartedAt: 2015-10-08 21:04:08 -0700 (Thu, 08 Oct 2015) |
| EndedAt: 2015-10-08 21:07:44 -0700 (Thu, 08 Oct 2015) |
| EllapsedTime: 216.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r RMassBank -R && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RMassBank
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* checking for file 'RMassBank/DESCRIPTION' ... OK
* preparing 'RMassBank':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-3.1-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: Rcpp
msmsWorkflow: Step 1. Acquire all MSMS spectra from files
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|================================================================| 100%msmsWorkflow: Step 2. First analysis pre recalibration
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msmsWorkflow: Step 3. Aggregate all spectra
msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra
Loading required package: gplots
Attaching package: 'gplots'
The following object is masked from 'package:stats':
lowess
msmsWorkflow: Done.
msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra
msmsWorkflow: Done.
msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra
msmsWorkflow: Done.
msmsWorkflow: Step 5. Reanalyze recalibrated spectra
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msmsWorkflow: Step 6. Aggregate recalibrated results
msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O
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msmsWorkflow: Step 8. Peak multiplicity filtering
msmsWorkflow: Done.
mbWorkflow: Step 1. Gather info from several databases
Error: processing vignette 'RMassBank.Rnw' failed with diagnostics:
chunk 22
Error in fromJSON(data) : unexpected character '<'
Execution halted