Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.1: BUILD BIN report for MIMOSA on morelia

This page was generated on 2015-10-09 09:41:35 -0700 (Fri, 09 Oct 2015).

Package 600/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MIMOSA 1.6.0
Greg Finak
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/MIMOSA
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: MIMOSA
Version: 1.6.0
Command: rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MIMOSA.buildbin-libdir
StartedAt: 2015-10-09 07:55:10 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 07:55:33 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 22.6 seconds
RetCode: 0
Status:  OK 
PackageFile: MIMOSA_1.6.0.tgz
PackageFileSize: 365.5 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MIMOSA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MIMOSA.buildbin-libdir MIMOSA_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘MIMOSA’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppArmadillo/include"  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fPIC  -Wall -mtune=core2 -g -O2  -c BetaMix.cpp -o BetaMix.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppArmadillo/include"  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fPIC  -Wall -mtune=core2 -g -O2  -c MCMC.cpp -o MCMC.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppArmadillo/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c MIMOSA_init.c -o MIMOSA_init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppArmadillo/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c betaintegral.c -o betaintegral.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppArmadillo/include"  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fPIC  -Wall -mtune=core2 -g -O2  -c betaintegralRcpp.cpp -o betaintegralRcpp.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MIMOSA.so BetaMix.o MCMC.o MIMOSA_init.o betaintegral.o betaintegralRcpp.o -O3 -lm -lstdc++ -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/MIMOSA.buildbin-libdir/MIMOSA/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for ‘summary’ from package ‘base’ in package ‘MIMOSA’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MIMOSA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs//MIMOSA.so"