BioC 3.1: CHECK report for KEGGprofile on moscato2

Package: KEGGprofile

Version: 1.10.0

Command: rm -rf KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && mkdir KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGprofile.buildbin-libdir KEGGprofile_1.10.0.tar.gz >KEGGprofile.Rcheck\00install.out 2>&1 && cp KEGGprofile.Rcheck\00install.out KEGGprofile-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=KEGGprofile.buildbin-libdir --install="check:KEGGprofile-install.out" --force-multiarch --no-vignettes --timings KEGGprofile_1.10.0.tar.gz

StartedAt: 2015-10-09 03:12:11 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 03:15:27 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 196.7 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGprofile.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && mkdir KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGprofile.buildbin-libdir KEGGprofile_1.10.0.tar.gz >KEGGprofile.Rcheck\00install.out 2>&1 && cp KEGGprofile.Rcheck\00install.out KEGGprofile-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=KEGGprofile.buildbin-libdir --install="check:KEGGprofile-install.out" --force-multiarch --no-vignettes --timings KEGGprofile_1.10.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/KEGGprofile.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGprofile/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGprofile' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGprofile' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [29s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
plot_pathway 8.56   0.53   10.86
** running examples for arch 'x64' ... [30s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
plot_pathway 9.74   0.61   10.37
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'KEGGprofile' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'

install for x64

* installing *source* package 'KEGGprofile' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* MD5 sums
packaged installation of 'KEGGprofile' as KEGGprofile_1.10.0.zip
* DONE (KEGGprofile)

name	user	system	elapsed
col_by_value	0.02	0.00	0.01
convertId	0.43	0.05	2.89
download_KEGGfile	0.02	0.01	1.48
download_latest_pathway	0	0	0
find_enriched_pathway	3.20	0.02	3.23
newIdMatrix	0	0	0
parse_XMLfile	0.13	0.00	0.12
plot_pathway	8.56	0.53	10.86
plot_pathway_cor	4.04	0.04	4.08
plot_profile	1.34	0.08	1.45

name	user	system	elapsed
col_by_value	0.02	0.00	0.01
convertId	0.54	0.12	3.06
download_KEGGfile	0.03	0.02	2.31
download_latest_pathway	0	0	0
find_enriched_pathway	3.31	0.00	3.31
newIdMatrix	0	0	0
parse_XMLfile	0.09	0.00	0.09
plot_pathway	9.74	0.61	10.37
plot_pathway_cor	4.40	0.04	4.47
plot_profile	1.42	0.25	1.67