IdMappingRetrieval 1.16.0
Alex Lisovich , Roger Day
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/IdMappingRetrieval | | Last Changed Rev: 102591 / Revision: 109384 | | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
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### Running command:
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### chmod a+r IdMappingRetrieval -R && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data IdMappingRetrieval
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* checking for file 'IdMappingRetrieval/DESCRIPTION' ... OK
* preparing 'IdMappingRetrieval':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-3.1-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.0 (2015-02-19) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.19.0 (2015-02-27) successfully loaded. See ?R.oo for help.
Attaching package: 'R.oo'
The following objects are masked from 'package:methods':
getClasses, getMethods
The following objects are masked from 'package:base':
attach, detach, gc, load, save
Loading required package: XML
Loading required package: RCurl
Loading required package: bitops
Attaching package: 'RCurl'
The following object is masked from 'package:R.oo':
clone
Loading required package: rChoiceDialogs
Loading required package: rJava
Attaching package: 'rJava'
The following object is masked from 'package:RCurl':
clone
The following object is masked from 'package:R.oo':
clone
This is rChoiceDialogs 1.0.6 2014-09-05
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
This is IdMappingRetrieval 1.16.0 2015-04-09
trying URL 'http://media.affymetrix.com/analysis/downloads/na35/ivt/HG-U133_Plus_2.na35.annot.csv.zip'
Content type 'application/zip' length 34607271 bytes (33.0 MB)
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downloaded 33.0 MB
* Hostname was NOT found in DNS cache
* Trying 129.43.40.120...
* Connected to david.ncifcrf.gov (129.43.40.120) port 443 (#0)
* Unknown SSL protocol error in connection to david.ncifcrf.gov:443
* Closing connection 0
Error: processing vignette 'IdMappingRetrieval.Rnw' failed with diagnostics:
chunk 3 (label = chunk3a)
Error in function (type, msg, asError = TRUE) :
Unknown SSL protocol error in connection to david.ncifcrf.gov:443
Execution halted