BioC 3.1: CHECK report for IMPCdata on zin2
This page was generated on 2015-10-09 09:26:33 -0700 (Fri, 09 Oct 2015).
IMPCdata 1.2.0 Jeremy Mason
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/IMPCdata | Last Changed Rev: 102591 / Revision: 109384 | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
Summary
Package: IMPCdata |
Version: 1.2.0 |
Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings IMPCdata_1.2.0.tar.gz |
StartedAt: 2015-10-09 02:41:44 -0700 (Fri, 09 Oct 2015) |
EndedAt: 2015-10-09 02:44:50 -0700 (Fri, 09 Oct 2015) |
EllapsedTime: 185.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: IMPCdata.Rcheck |
Warnings: 0 |
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings IMPCdata_1.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/IMPCdata.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/171s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
getAlleles 0.135 0.021 29.792
printAlleles 0.133 0.008 29.573
printGenes 0.111 0.026 29.466
getGenes 0.115 0.018 29.965
getParameters 0.033 0.003 7.723
printParameters 0.027 0.008 7.590
getProcedures 0.022 0.009 7.436
printProcedures 0.029 0.002 7.444
printPhenCenters 0.014 0.008 8.183
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
IMPCdata.Rcheck/00install.out:
* installing *source* package ‘IMPCdata’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings:
name | user | system | elapsed
|
getAlleles | 0.135 | 0.021 | 29.792 |
|
getGenes | 0.115 | 0.018 | 29.965 |
|
getIMPCDataset | 0.003 | 0.001 | 0.307 |
|
getIMPCTable | 0.007 | 0.000 | 1.224 |
|
getName | 0.001 | 0.000 | 0.345 |
|
getParameters | 0.033 | 0.003 | 7.723 |
|
getPhenCenters | 0.011 | 0.000 | 4.164 |
|
getPipelines | 0.002 | 0.004 | 1.639 |
|
getProcedures | 0.022 | 0.009 | 7.436 |
|
getStrains | 0.007 | 0.000 | 1.900 |
|
getZygosities | 0.002 | 0.000 | 0.292 |
|
printAlleles | 0.133 | 0.008 | 29.573 |
|
printGenes | 0.111 | 0.026 | 29.466 |
|
printParameters | 0.027 | 0.008 | 7.590 |
|
printPhenCenters | 0.014 | 0.008 | 8.183 |
|
printPipelines | 0.002 | 0.003 | 1.625 |
|
printProcedures | 0.029 | 0.002 | 7.444 |
|
printStrains | 0.008 | 0.000 | 1.912 |
|