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BioC 3.1: BUILD BIN report for GenomicTuples on petty

This page was generated on 2015-10-09 09:36:59 -0700 (Fri, 09 Oct 2015).

Package 401/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicTuples 1.2.1
Peter Hickey
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/GenomicTuples
Last Changed Rev: 103107 / Revision: 109384
Last Changed Date: 2015-04-26 17:18:37 -0700 (Sun, 26 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicTuples
Version: 1.2.1
Command: rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenomicTuples_1.2.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenomicTuples.buildbin-libdir
StartedAt: 2015-10-09 03:10:05 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 03:10:37 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 31.6 seconds
RetCode: 0
Status:  OK 
PackageFile: GenomicTuples_1.2.1.tgz
PackageFileSize: 354.6 KiB

Command output

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###
### Running command:
###
###   rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenomicTuples_1.2.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenomicTuples.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GenomicTuples.buildbin-libdir GenomicTuples_1.2.1.tar.gz'
>>>>>>> 

* installing *source* package ‘GenomicTuples’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c GenomicTuples_init.c -o GenomicTuples_init.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c IPD.cpp -o IPD.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c RcppExports.cpp -o RcppExports.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c allTuplesSorted.cpp -o allTuplesSorted.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c compareGTuples.cpp -o compareGTuples.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o GenomicTuples.so GenomicTuples_init.o IPD.o RcppExports.o allTuplesSorted.o compareGTuples.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/GenomicTuples.buildbin-libdir/GenomicTuples/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (GenomicTuples)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "GenomicTuples.buildbin-libdir/GenomicTuples/libs//GenomicTuples.so"