GWASTools 1.14.2 Stephanie M. Gogarten , Adrienne Stilp
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/GWASTools | Last Changed Rev: 109335 / Revision: 109384 | Last Changed Date: 2015-10-07 16:11:28 -0700 (Wed, 07 Oct 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | [ OK ] | |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd GWASTools.buildbin-libdir/GWASTools && zip -r ../../GWASTools_1.14.2.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: CITATION (188 bytes security) (deflated 29%)
adding: data/ (256 bytes security) (stored 0%)
adding: data/Rdata.rdb (188 bytes security) (deflated 22%)
adding: data/Rdata.rds (188 bytes security) (stored 0%)
adding: data/Rdata.rdx (188 bytes security) (stored 0%)
adding: DESCRIPTION (188 bytes security) (deflated 58%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/Affymetrix.pdf (188 bytes security) (deflated 8%)
adding: doc/Affymetrix.R (188 bytes security) (deflated 76%)
adding: doc/Affymetrix.Rnw (188 bytes security) (deflated 69%)
adding: doc/DataCleaning.pdf (188 bytes security) (deflated 23%)
adding: doc/DataCleaning.R (188 bytes security) (deflated 78%)
adding: doc/DataCleaning.Rnw (188 bytes security) (deflated 71%)
adding: doc/Formats.pdf (188 bytes security) (deflated 9%)
adding: doc/Formats.R (188 bytes security) (deflated 77%)
adding: doc/Formats.Rnw (188 bytes security) (deflated 67%)
adding: doc/index.html (188 bytes security) (deflated 72%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 88%)
adding: help/GWASTools.rdb (188 bytes security) (deflated 1%)
adding: help/GWASTools.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 91%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 68%)
adding: MD5 (188 bytes security) (deflated 52%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (deflated 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 70%)
adding: NEWS.Rd (188 bytes security) (deflated 72%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/GWASTools (188 bytes security) (deflated 41%)
adding: R/GWASTools.rdb (188 bytes security) (deflated 21%)
adding: R/GWASTools.rdx (188 bytes security) (deflated 0%)
adding: unitTests/ (256 bytes security) (stored 0%)
adding: unitTests/alleleFrequency_test.R (188 bytes security) (deflated 78%)
adding: unitTests/allequal_test.R (188 bytes security) (deflated 41%)
adding: unitTests/anomDetectBAF_test.R (188 bytes security) (deflated 73%)
adding: unitTests/apartSnpSelection_test.R (188 bytes security) (deflated 57%)
adding: unitTests/assocCoxPH_test.R (188 bytes security) (deflated 73%)
adding: unitTests/assocRegression_test.R (188 bytes security) (deflated 83%)
adding: unitTests/BAFfromClusterMeans_test.R (188 bytes security) (deflated 42%)
adding: unitTests/BAFfromGenotypes_test.R (188 bytes security) (deflated 69%)
adding: unitTests/batchChisqTest_test.R (188 bytes security) (deflated 84%)
adding: unitTests/batchFisherTest_test.R (188 bytes security) (deflated 84%)
adding: unitTests/checkGenotypeFile_test.R (188 bytes security) (deflated 82%)
adding: unitTests/checkImputedDosageFile_test.R (188 bytes security) (deflated 91%)
adding: unitTests/checkIntensityFile_test.R (188 bytes security) (deflated 83%)
adding: unitTests/chromIntensityPlot_test.R (188 bytes security) (deflated 73%)
adding: unitTests/convertNcdfGds_test.R (188 bytes security) (deflated 82%)
adding: unitTests/createAffyIntensityFile_test.R (188 bytes security) (deflated 80%)
adding: unitTests/createDataFile_test.R (188 bytes security) (deflated 87%)
adding: unitTests/dupDosageCorAcrossDatasets_test.R (188 bytes security) (deflated 75%)
adding: unitTests/duplicateDiscordanceAcrossDatasets_test.R (188 bytes security) (deflated 88%)
adding: unitTests/duplicateDiscordance_test.R (188 bytes security) (deflated 80%)
adding: unitTests/exactHWE_test.R (188 bytes security) (deflated 58%)
adding: unitTests/findBAFvariance_test.R (188 bytes security) (deflated 63%)
adding: unitTests/GdsGenotypeReader_test.R (188 bytes security) (deflated 85%)
adding: unitTests/GdsIntensityReader_test.R (188 bytes security) (deflated 65%)
adding: unitTests/GdsReader_test.R (188 bytes security) (deflated 76%)
adding: unitTests/gdsSubsetCheck_test.R (188 bytes security) (deflated 88%)
adding: unitTests/gdsSubset_test.R (188 bytes security) (deflated 94%)
adding: unitTests/GenotypeData_test.R (188 bytes security) (deflated 81%)
adding: unitTests/genotypeToCharacter_test.R (188 bytes security) (deflated 73%)
adding: unitTests/getobj_test.R (188 bytes security) (deflated 26%)
adding: unitTests/hetByScanChrom_test.R (188 bytes security) (deflated 69%)
adding: unitTests/hetBySnpSex_test.R (188 bytes security) (deflated 66%)
adding: unitTests/ibdPlot_test.R (188 bytes security) (deflated 57%)
adding: unitTests/imputedDosageFile_test.R (188 bytes security) (deflated 89%)
adding: unitTests/IntensityData_test.R (188 bytes security) (deflated 70%)
adding: unitTests/MatrixGenotypeReader_test.R (188 bytes security) (deflated 70%)
adding: unitTests/meanIntensityByScanChrom_test.R (188 bytes security) (deflated 76%)
adding: unitTests/missingGenotypeByScanChrom_test.R (188 bytes security) (deflated 68%)
adding: unitTests/missingGenotypeBySnpSex_test.R (188 bytes security) (deflated 71%)
adding: unitTests/NcdfGenotypeReader_test.R (188 bytes security) (deflated 69%)
adding: unitTests/NcdfIntensityReader_test.R (188 bytes security) (deflated 69%)
adding: unitTests/NcdfReader_test.R (188 bytes security) (deflated 67%)
adding: unitTests/ncdfSubset_test.R (188 bytes security) (deflated 84%)
adding: unitTests/pedigreeCheck_test.R (188 bytes security) (deflated 76%)
adding: unitTests/pedigreeMaxUnrelated_test.R (188 bytes security) (deflated 86%)
adding: unitTests/pedigreePairwiseRelatedness_test.R (188 bytes security) (deflated 78%)
adding: unitTests/plinkUtils_test.R (188 bytes security) (deflated 85%)
adding: unitTests/pseudoautoIntensityPlot_test.R (188 bytes security) (deflated 49%)
adding: unitTests/qualityScoreByScan_test.R (188 bytes security) (deflated 65%)
adding: unitTests/qualityScoreBySnp_test.R (188 bytes security) (deflated 70%)
adding: unitTests/saveas_test.R (188 bytes security) (deflated 63%)
adding: unitTests/ScanAnnotationDataFrame_test.R (188 bytes security) (deflated 64%)
adding: unitTests/ScanAnnotationSQLite_test.R (188 bytes security) (deflated 67%)
adding: unitTests/setMissingGenotypes_test.R (188 bytes security) (deflated 80%)
adding: unitTests/SnpAnnotationDataFrame_test.R (188 bytes security) (deflated 72%)
adding: unitTests/SnpAnnotationSQLite_test.R (188 bytes security) (deflated 68%)
adding: unitTests/snpStats_test.R (188 bytes security) (deflated 62%)
adding: unitTests/vcfWrite_test.R (188 bytes security) (deflated 82%)