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BioC 3.1: INSTALL report for GLAD on moscato2

This page was generated on 2015-10-09 09:27:19 -0700 (Fri, 09 Oct 2015).

Package 415/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GLAD 2.32.0
Philippe Hupe
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/GLAD
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GLAD
Version: 2.32.0
Command: C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.1/bioc/src/contrib/GLAD_2.32.0.tar.gz && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch GLAD_2.32.0.tar.gz && rm GLAD_2.32.0.tar.gz
StartedAt: 2015-10-08 18:17:16 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 18:18:35 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 79.4 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.1/bioc/src/contrib/GLAD_2.32.0.tar.gz && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch GLAD_2.32.0.tar.gz && rm GLAD_2.32.0.tar.gz
###
##############################################################################
##############################################################################




install for i386

* installing to library 'E:/biocbld/bbs-3.1-bioc/R/library'
* installing *source* package 'GLAD' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c BkpInfo.cpp -o BkpInfo.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c HaarSeg.cpp -o HaarSeg.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c MoveBkp.cpp -o MoveBkp.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c OutliersGNL.cpp -o OutliersGNL.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c chrBreakpoints.cpp -o chrBreakpoints.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c cutree.cpp -o cutree.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c daglad.cpp -o daglad.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c distance.cpp -o distance.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c filterBkp.cpp -o filterBkp.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c findCluster.cpp -o findCluster.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c glad-utils.cpp -o glad-utils.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c hclust.cpp -o hclust.o
gcc -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c laws.c -o laws.o
g++ -m32 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c loopRemove.cpp -o loopRemove.o
g++ -m32 -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LE:/biocbld/BBS-3˜1.1-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.1-bioc/R/library/GLAD/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'E:/biocbld/bbs-3.1-bioc/R/library'
* installing *source* package 'GLAD' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c BkpInfo.cpp -o BkpInfo.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c HaarSeg.cpp -o HaarSeg.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c MoveBkp.cpp -o MoveBkp.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c OutliersGNL.cpp -o OutliersGNL.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c chrBreakpoints.cpp -o chrBreakpoints.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c cutree.cpp -o cutree.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c daglad.cpp -o daglad.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c distance.cpp -o distance.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c filterBkp.cpp -o filterBkp.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c findCluster.cpp -o findCluster.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c glad-utils.cpp -o glad-utils.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c hclust.cpp -o hclust.o
gcc -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c laws.c -o laws.o
g++ -m64 -I"E:/biocbld/BBS-3˜1.1-B/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c loopRemove.cpp -o loopRemove.o
g++ -m64 -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -LC:/GSL/x64/lib -lgsl -lgslcblas -lm -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LE:/biocbld/BBS-3˜1.1-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.1-bioc/R/library/GLAD/libs/x64
** testing if installed package can be loaded
* DONE (GLAD)