BioC 3.1: CHECK report for FISHalyseR on moscato2
This page was generated on 2015-10-09 09:32:14 -0700 (Fri, 09 Oct 2015).
FISHalyseR 1.2.0 Karesh Arunakirinathan , Andreas Heindl
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/FISHalyseR | Last Changed Rev: 102591 / Revision: 109384 | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
Summary
Package: FISHalyseR
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Version: 1.2.0
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Command: rm -rf FISHalyseR.buildbin-libdir FISHalyseR.Rcheck && mkdir FISHalyseR.buildbin-libdir FISHalyseR.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FISHalyseR.buildbin-libdir FISHalyseR_1.2.0.tar.gz >FISHalyseR.Rcheck\00install.out 2>&1 && cp FISHalyseR.Rcheck\00install.out FISHalyseR-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=FISHalyseR.buildbin-libdir --install="check:FISHalyseR-install.out" --force-multiarch --no-vignettes --timings FISHalyseR_1.2.0.tar.gz
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StartedAt: 2015-10-09 01:40:59 -0700 (Fri, 09 Oct 2015)
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EndedAt: 2015-10-09 01:42:40 -0700 (Fri, 09 Oct 2015)
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EllapsedTime: 100.7 seconds
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RetCode: 0
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Status: OK
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CheckDir: FISHalyseR.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf FISHalyseR.buildbin-libdir FISHalyseR.Rcheck && mkdir FISHalyseR.buildbin-libdir FISHalyseR.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FISHalyseR.buildbin-libdir FISHalyseR_1.2.0.tar.gz >FISHalyseR.Rcheck\00install.out 2>&1 && cp FISHalyseR.Rcheck\00install.out FISHalyseR-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=FISHalyseR.buildbin-libdir --install="check:FISHalyseR-install.out" --force-multiarch --no-vignettes --timings FISHalyseR_1.2.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/FISHalyseR.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FISHalyseR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FISHalyseR' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FISHalyseR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
computeIlluminationCorrection: warning in gblur(I, s = 5): partial
argument match of 's' to 'sigma'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [32s] OK
** running examples for arch 'x64' ... [30s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'E:/biocbld/bbs-3.1-bioc/meat/FISHalyseR.Rcheck/00check.log'
for details.
FISHalyseR.Rcheck/00install.out:
install for i386
* installing *source* package 'FISHalyseR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'FISHalyseR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FISHalyseR' as FISHalyseR_1.2.0.zip
* DONE (FISHalyseR)
FISHalyseR.Rcheck/examples_i386/FISHalyseR-Ex.timings:
name | user | system | elapsed
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analyseParticles | 2.37 | 0.11 | 2.48 |
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calculateMaxEntropy | 0.51 | 0.09 | 0.61 |
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calculateThreshold | 0.27 | 0.06 | 0.33 |
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computeIlluminationCorrection | 0 | 0 | 0 |
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FISHalyseR.Rcheck/examples_x64/FISHalyseR-Ex.timings:
name | user | system | elapsed
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analyseParticles | 1.64 | 0.06 | 1.70 |
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calculateMaxEntropy | 1.03 | 0.13 | 1.16 |
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calculateThreshold | 0.33 | 0.04 | 0.37 |
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computeIlluminationCorrection | 0 | 0 | 0 |
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