EBImage 4.10.1
Andrzej Oleś
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/EBImage | | Last Changed Rev: 105709 / Revision: 109384 | | Last Changed Date: 2015-07-01 01:46:04 -0700 (Wed, 01 Jul 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD INSTALL EBImage
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* installing to library ‘/home/biocbuild/bbs-3.1-bioc/R/library’
* installing *source* package ‘EBImage’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c EBImage.c -o EBImage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c distmap.c -o distmap.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c drawCircle.c -o drawCircle.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c floodFill.cpp -o floodFill.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c greyscale_morphology.c -o greyscale_morphology.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c haralick.c -o haralick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c medianFilter.c -o medianFilter.o
medianFilter.c: In function ‘medianFilter’:
medianFilter.c:463:45: warning: unused variable ‘j’ [-Wunused-variable]
int nprotect = 0, x, y, z, r, memsize, i, j, imagesize, framesize;
^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c morphology.c -o morphology.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c nativeRaster.c -o nativeRaster.o
nativeRaster.c: In function ‘nativeRaster’:
nativeRaster.c:14:11: warning: unused variable ‘in’ [-Wunused-variable]
double *in;
^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c normalize.c -o normalize.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c objects.c -o objects.o
In file included from objects.h:5:0,
from objects.c:1:
objects.c: In function ‘stackObjects’:
/home/biocbuild/bbs-3.1-bioc/R/include/Rdefines.h:132:37: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized]
#define SET_DIM(x, n) setAttrib(x, R_DimSymbol, n)
^
objects.c:171:22: note: ‘dim’ was declared here
SEXP res, st=NULL, dim, xys;
^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c ocontour.c -o ocontour.o
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c propagate.cpp -o propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c spatial.c -o spatial.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c thresh.c -o thresh.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c tile.c -o tile.o
tile.c: In function ‘tile’:
tile.c:21:51: warning: variable ‘iim’ set but not used [-Wunused-but-set-variable]
int nprotect, nx, ny, nz, ifg, ibg, nxr, nyr, * iim, i, j, index, x, y;
^
tile.c:21:34: warning: unused variable ‘ibg’ [-Wunused-variable]
int nprotect, nx, ny, nz, ifg, ibg, nxr, nyr, * iim, i, j, index, x, y;
^
tile.c:21:29: warning: unused variable ‘ifg’ [-Wunused-variable]
int nprotect, nx, ny, nz, ifg, ibg, nxr, nyr, * iim, i, j, index, x, y;
^
tile.c: In function ‘untile’:
tile.c:142:37: warning: unused variable ‘id’ [-Wunused-variable]
void *src, *tgt; double *dd; int *id;
^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c tools.c -o tools.o
tools.c: In function ‘validImage’:
tools.c:44:11: warning: variable ‘dp’ set but not used [-Wunused-but-set-variable]
double *dp;
^
tools.c: In function ‘getColorStrides’:
tools.c:119:20: warning: unused variable ‘colorMode’ [-Wunused-variable]
int width,height,colorMode,nbChannels;
^
g++ -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c watershed.cpp -o watershed.o
g++ -shared -L/home/biocbuild/bbs-3.1-bioc/R/lib -L/usr/local/lib -o EBImage.so EBImage.o distmap.o drawCircle.o floodFill.o greyscale_morphology.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o watershed.o -L/home/biocbuild/bbs-3.1-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.1-bioc/R/library/EBImage/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (EBImage)