DNaseR 1.5.0
Pedro Madrigal
| Snapshot Date: 2015-02-28 17:20:31 -0800 (Sat, 28 Feb 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DNaseR | | Last Changed Rev: 95443 / Revision: 100008 | | Last Changed Date: 2014-10-13 14:47:41 -0700 (Mon, 13 Oct 2014) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### rm -rf DNaseR.buildbin-libdir DNaseR.Rcheck && mkdir DNaseR.buildbin-libdir DNaseR.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DNaseR.buildbin-libdir DNaseR_1.5.0.tar.gz >DNaseR.Rcheck\00install.out 2>&1 && cp DNaseR.Rcheck\00install.out DNaseR-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=DNaseR.buildbin-libdir --install="check:DNaseR-install.out" --force-multiarch --no-vignettes --timings DNaseR_1.5.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/DNaseR.Rcheck'
* using R Under development (unstable) (2015-02-23 r67879)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DNaseR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DNaseR' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DNaseR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components with restrictions not permitted:
GPL-2 + file LICENSE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'BiocGenerics'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [22s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
DNaseR-package 9.77 0.34 10.10
footprints 7.92 0.31 8.24
** running examples for arch 'x64' ... [31s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
DNaseR-package 14.32 0.47 14.79
footprints 10.81 0.29 11.10
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [15s]
[15s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [19s]
[19s] OK
* checking for unstated dependencies in vignettes ... NOTE
'::' or ':::' import not declared from: 'BiocStyle'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'E:/biocbld/bbs-3.1-bioc/meat/DNaseR.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'DNaseR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'DNaseR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DNaseR' as DNaseR_1.5.0.zip
* DONE (DNaseR)