BioC 3.1: CHECK report for DAVIDQuery on zin2

Package: DAVIDQuery

Version: 1.30.4

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings DAVIDQuery_1.30.4.tar.gz

StartedAt: 2015-10-09 00:20:25 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 00:20:55 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 30.5 seconds

RetCode: 1

Status:  ERROR

CheckDir: DAVIDQuery.Rcheck

Warnings: NA

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings DAVIDQuery_1.30.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/DAVIDQuery.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DAVIDQuery/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAVIDQuery’ version ‘1.30.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAVIDQuery’ can be installed ... [1s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘DAVIDQuery-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getAffyProbesetList
> ### Title: Retrieve Affy probeset IDs from DAVID.
> ### Aliases: getAffyProbesetList
> ### Keywords: database
> 
> ### ** Examples
> 
> head(getAffyProbesetList("Human Genome U133 Plus 2.0", menu=FALSE, verbose=TRUE))
Retrieving Affymetrix array types...
Error in function (type, msg, asError = TRUE)  : 
  SSL certificate problem: unable to get local issuer certificate
Calls: head ... <Anonymous> -> curlPerform -> .Call -> <Anonymous> -> fun
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.1-bioc/meat/DAVIDQuery.Rcheck/00check.log’
for details.

* installing *source* package ‘DAVIDQuery’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DAVIDQuery)

name	user	system	elapsed
DAVIDQuery	0.054	0.004	3.670
bracketedStrings	0.001	0.000	0.001
convertIDList	0.001	0.000	0.000
findInBrackets	0.001	0.000	0.001
getAffyChipTypes	0	0	0