BioC 3.1: BUILD BIN report for ChIPseqR on petty

Package: ChIPseqR

Version: 1.22.1

Command: rm -rf ChIPseqR.buildbin-libdir && mkdir ChIPseqR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChIPseqR_1.22.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChIPseqR.buildbin-libdir

StartedAt: 2015-10-09 03:02:54 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 03:03:33 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 38.7 seconds

RetCode: 0

Status:  OK

PackageFile: ChIPseqR_1.22.1.tgz

PackageFileSize: 515.3 KiB

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### Running command:
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###   rm -rf ChIPseqR.buildbin-libdir && mkdir ChIPseqR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChIPseqR_1.22.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChIPseqR.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ChIPseqR.buildbin-libdir ChIPseqR_1.22.1.tar.gz'
>>>>>>> 

* installing *source* package ‘ChIPseqR’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c startScore.c -o startScore.o
startScore.c: In function ‘_ratioStat_pois’:
startScore.c:66: warning: unused variable ‘tmp_stat’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o ChIPseqR.so startScore.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/ChIPseqR.buildbin-libdir/ChIPseqR/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
Warning: replacing previous import by ‘graphics::image’ when loading ‘ChIPseqR’
Warning: replacing previous import by ‘utils::head’ when loading ‘ChIPseqR’
Warning: replacing previous import by ‘utils::tail’ when loading ‘ChIPseqR’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
Warning: replacing previous import by ‘graphics::image’ when loading ‘ChIPseqR’
Warning: replacing previous import by ‘utils::head’ when loading ‘ChIPseqR’
Warning: replacing previous import by ‘utils::tail’ when loading ‘ChIPseqR’
* DONE (ChIPseqR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so"