ChIPpeakAnno 3.2.2
Lihua Julie Zhu , Jianhong Ou
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/ChIPpeakAnno | | Last Changed Rev: 103921 / Revision: 109384 | | Last Changed Date: 2015-05-18 07:59:06 -0700 (Mon, 18 May 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | [ OK ] | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### cd ChIPpeakAnno.buildbin-libdir/ChIPpeakAnno && zip -r ../../ChIPpeakAnno_3.2.2.zip . & cd ../..
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adding: CITATION (188 bytes security) (deflated 58%)
adding: data/ (256 bytes security) (stored 0%)
adding: data/annotatedPeak.rda (188 bytes security) (deflated 0%)
adding: data/datalist (188 bytes security) (deflated 46%)
adding: data/enrichedGO.rda (188 bytes security) (stored 0%)
adding: data/ExonPlusUtr.human.GRCh37.rda (188 bytes security) (deflated 0%)
adding: data/myPeakList.rda (188 bytes security) (deflated 0%)
adding: data/Peaks.Ste12.Replicate1.rda (188 bytes security) (stored 0%)
adding: data/Peaks.Ste12.Replicate2.rda (188 bytes security) (stored 0%)
adding: data/Peaks.Ste12.Replicate3.rda (188 bytes security) (stored 0%)
adding: data/TSS.human.GRCh37.rda (188 bytes security) (deflated 0%)
adding: data/TSS.human.GRCh38.rda (188 bytes security) (deflated 0%)
adding: data/TSS.human.NCBI36.rda (188 bytes security) (deflated 0%)
adding: data/TSS.mouse.GRCm38.rda (188 bytes security) (deflated 0%)
adding: data/TSS.mouse.NCBIM37.rda (188 bytes security) (deflated 0%)
adding: data/TSS.rat.RGSC3.4.rda (188 bytes security) (deflated 0%)
adding: data/TSS.rat.Rnor_5.0.rda (188 bytes security) (deflated 0%)
adding: data/TSS.zebrafish.Zv8.rda (188 bytes security) (deflated 0%)
adding: data/TSS.zebrafish.Zv9.rda (188 bytes security) (deflated 0%)
adding: DESCRIPTION (188 bytes security) (deflated 48%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/ChIPpeakAnno.pdf (188 bytes security) (deflated 11%)
adding: doc/ChIPpeakAnno.R (188 bytes security) (deflated 81%)
adding: doc/ChIPpeakAnno.Rnw (188 bytes security) (deflated 71%)
adding: doc/index.html (188 bytes security) (deflated 60%)
adding: extdata/ (256 bytes security) (stored 0%)
adding: extdata/annotatedPeaks.2.10.0.rds (188 bytes security) (deflated 1%)
adding: extdata/examplePattern.fa (188 bytes security) (deflated 24%)
adding: extdata/gadem.rda (188 bytes security) (deflated 4%)
adding: extdata/GFF_peaks.gff (188 bytes security) (deflated 76%)
adding: extdata/GSM700906_AA86_vs_INPUT_WS170.bed (188 bytes security) (deflated 62%)
adding: extdata/GSM700907_DAF-12_TAP_vs_INPUT_#1_WS170.bed (188 bytes security) (deflated 63%)
adding: extdata/GSM700908_DAF-12_TAP_vs_INPUT_#2_WS170.bed (188 bytes security) (deflated 63%)
adding: extdata/GSM700909_DAF-12_TAP_vs_INPUT_#3_WS170.bed (188 bytes security) (deflated 63%)
adding: extdata/MACS_output.bed (188 bytes security) (deflated 65%)
adding: extdata/MACS_peaks.xls (188 bytes security) (deflated 48%)
adding: extdata/peaks_hg19.bed (188 bytes security) (deflated 63%)
adding: extdata/ref.gtf (188 bytes security) (deflated 33%)
adding: extdata/test.bed (188 bytes security) (deflated 12%)
adding: extdata/WS220.bed (188 bytes security) (deflated 76%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 66%)
adding: help/ChIPpeakAnno.rdb (188 bytes security) (deflated 1%)
adding: help/ChIPpeakAnno.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 76%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 70%)
adding: MD5 (188 bytes security) (deflated 48%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 56%)
adding: NEWS (188 bytes security) (deflated 63%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/ChIPpeakAnno (188 bytes security) (deflated 41%)
adding: R/ChIPpeakAnno.rdb (188 bytes security) (deflated 1%)
adding: R/ChIPpeakAnno.rdx (188 bytes security) (stored 0%)
adding: unitTests/ (256 bytes security) (stored 0%)
adding: unitTests/test_addGeneIDs.R (188 bytes security) (deflated 37%)
adding: unitTests/test_annotatePeakInBatch.R (188 bytes security) (deflated 80%)
adding: unitTests/test_assignChromosomeRegion.R (188 bytes security) (deflated 67%)
adding: unitTests/test_binOverFeature.R (188 bytes security) (deflated 69%)
adding: unitTests/test_findOverlapsOfPeaks.R (188 bytes security) (deflated 69%)
adding: unitTests/test_getAllPeakSequence.R (188 bytes security) (deflated 54%)
adding: unitTests/test_getAnnotation.R (188 bytes security) (deflated 28%)
adding: unitTests/test_getVennCounts.R (188 bytes security) (deflated 73%)
adding: unitTests/test_makeVennDiagram.R (188 bytes security) (deflated 85%)
adding: unitTests/test_peaksNearBDP.R (188 bytes security) (deflated 63%)
adding: unitTests/test_toGRanges.R (188 bytes security) (deflated 55%)
adding: unitTests/test_write2FASTA.R (188 bytes security) (deflated 52%)