CNAnorm 1.14.0
Stefano Berri
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/CNAnorm | | Last Changed Rev: 102591 / Revision: 109384 | | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings CNAnorm_1.14.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.1-bioc/meat/CNAnorm.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CNAnorm/DESCRIPTION’ ... OK
* this is package ‘CNAnorm’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CNAnorm’ can be installed ... [3s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [20s/21s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
peakPloidy 15.087 0.478 15.582
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
* installing *source* package ‘CNAnorm’ ...
** libs
gfortran-4.8 -fPIC -g -O2 -Wall -c daxpy.f -o daxpy.o
gfortran-4.8 -fPIC -g -O2 -Wall -c ddot.f -o ddot.o
gfortran-4.8 -fPIC -g -O2 -Wall -c dgbfa.f -o dgbfa.o
gfortran-4.8 -fPIC -g -O2 -Wall -c dgbsl.f -o dgbsl.o
gfortran-4.8 -fPIC -g -O2 -Wall -c dscal.f -o dscal.o
gfortran-4.8 -fPIC -g -O2 -Wall -c dsmooth.f -o dsmooth.o
Warning: Nonconforming tab character in column 1 of line 14
Warning: Nonconforming tab character in column 1 of line 15
Warning: Nonconforming tab character in column 1 of line 16
Warning: Nonconforming tab character in column 1 of line 17
Warning: Nonconforming tab character in column 1 of line 18
Warning: Nonconforming tab character in column 1 of line 19
Warning: Nonconforming tab character in column 1 of line 20
Warning: Nonconforming tab character in column 1 of line 21
Warning: Nonconforming tab character in column 1 of line 22
Warning: Nonconforming tab character in column 3 of line 23
Warning: Nonconforming tab character in column 1 of line 24
Warning: Nonconforming tab character in column 1 of line 25
Warning: Nonconforming tab character in column 1 of line 26
Warning: Nonconforming tab character in column 1 of line 27
Warning: Nonconforming tab character in column 1 of line 28
Warning: Nonconforming tab character in column 1 of line 29
Warning: Nonconforming tab character in column 1 of line 30
Warning: Nonconforming tab character in column 1 of line 31
Warning: Nonconforming tab character in column 2 of line 32
Warning: Nonconforming tab character in column 1 of line 33
Warning: Nonconforming tab character in column 1 of line 34
Warning: Nonconforming tab character in column 1 of line 35
Warning: Nonconforming tab character in column 3 of line 36
Warning: Nonconforming tab character in column 1 of line 37
Warning: Nonconforming tab character in column 1 of line 38
Warning: Nonconforming tab character in column 3 of line 39
Warning: Nonconforming tab character in column 1 of line 40
Warning: Nonconforming tab character in column 1 of line 41
Warning: Nonconforming tab character in column 1 of line 42
Warning: Nonconforming tab character in column 4 of line 43
Warning: Nonconforming tab character in column 1 of line 44
Warning: Nonconforming tab character in column 1 of line 45
Warning: Nonconforming tab character in column 1 of line 46
Warning: Nonconforming tab character in column 1 of line 47
Warning: Nonconforming tab character in column 1 of line 48
Warning: Nonconforming tab character in column 1 of line 50
Warning: Nonconforming tab character in column 1 of line 51
Warning: Nonconforming tab character in column 1 of line 52
Warning: Nonconforming tab character in column 1 of line 53
Warning: Nonconforming tab character in column 1 of line 54
Warning: Nonconforming tab character in column 1 of line 55
Warning: Nonconforming tab character in column 1 of line 56
Warning: Nonconforming tab character in column 1 of line 57
Warning: Nonconforming tab character in column 1 of line 58
Warning: Nonconforming tab character in column 1 of line 59
Warning: Nonconforming tab character in column 1 of line 60
Warning: Nonconforming tab character in column 1 of line 61
Warning: Nonconforming tab character in column 1 of line 62
Warning: Nonconforming tab character in column 1 of line 63
Warning: Nonconforming tab character in column 3 of line 64
Warning: Nonconforming tab character in column 1 of line 65
Warning: Nonconforming tab character in column 1 of line 66
Warning: Nonconforming tab character in column 3 of line 67
Warning: Nonconforming tab character in column 1 of line 68
Warning: Nonconforming tab character in column 1 of line 69
Warning: Nonconforming tab character in column 3 of line 71
Warning: Nonconforming tab character in column 1 of line 72
Warning: Nonconforming tab character in column 1 of line 73
Warning: Nonconforming tab character in column 3 of line 74
Warning: Nonconforming tab character in column 1 of line 75
Warning: Nonconforming tab character in column 1 of line 76
Warning: Nonconforming tab character in column 1 of line 77
Warning: Nonconforming tab character in column 1 of line 78
Warning: Nonconforming tab character in column 1 of line 79
Warning: Nonconforming tab character in column 3 of line 80
Warning: Nonconforming tab character in column 1 of line 81
Warning: Nonconforming tab character in column 1 of line 82
Warning: Nonconforming tab character in column 3 of line 83
Warning: Nonconforming tab character in column 1 of line 84
Warning: Nonconforming tab character in column 1 of line 85
Warning: Nonconforming tab character in column 1 of line 87
Warning: Nonconforming tab character in column 1 of line 88
Warning: Nonconforming tab character in column 1 of line 89
Warning: Nonconforming tab character in column 1 of line 90
Warning: Nonconforming tab character in column 3 of line 91
Warning: Nonconforming tab character in column 1 of line 92
Warning: Nonconforming tab character in column 1 of line 93
Warning: Nonconforming tab character in column 3 of line 94
Warning: Nonconforming tab character in column 1 of line 95
Warning: Nonconforming tab character in column 1 of line 96
dsmooth.f:62.20:
do 10 i=1,n-1
1
Warning: Nonconforming tab character at (1)
dsmooth.f:70.7:
& diff(i-1)*diff(i+1) .lt. 0.) isplit(i)=1
1
Warning: Nonconforming tab character at (1)
dsmooth.f: In function ‘amed3’:
dsmooth.f:50:0: warning: ‘__result_amed3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
function amed3(a,b,c)
^
gfortran-4.8 -fPIC -g -O2 -Wall -c idamax.f -o idamax.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/CNAnorm.Rcheck/CNAnorm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNAnorm)