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BioC 3.1: BUILD BIN report for BiRewire on petty

This page was generated on 2015-10-09 09:35:58 -0700 (Fri, 09 Oct 2015).

Package 107/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 2.2.3
Andrea Gobbi
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/BiRewire
Last Changed Rev: 106484 / Revision: 109384
Last Changed Date: 2015-07-16 05:59:29 -0700 (Thu, 16 Jul 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiRewire
Version: 2.2.3
Command: rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BiRewire_2.2.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BiRewire.buildbin-libdir
StartedAt: 2015-10-09 03:01:18 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 03:01:28 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 10.6 seconds
RetCode: 0
Status:  OK 
PackageFile: BiRewire_2.2.3.tgz
PackageFileSize: 548.2 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BiRewire_2.2.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BiRewire.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BiRewire.buildbin-libdir BiRewire_2.2.3.tar.gz'
>>>>>>> 

* installing *source* package ‘BiRewire’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c BiRewire.c -o BiRewire.o
BiRewire.c: In function ‘rewire_sparse’:
BiRewire.c:1149: warning: suggest parentheses around comparison in operand of &
BiRewire.c: In function ‘rewire_sparse_ex’:
BiRewire.c:1265: warning: suggest parentheses around comparison in operand of &
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c interface.c -o interface.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o BiRewire.so BiRewire.o interface.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BiRewire)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"