Package: tigre

Version: 1.8.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch tigre_1.8.0.tar.gz

StartedAt: 2012-01-09 06:01:17 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 06:03:22 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 125.6 seconds

RetCode: 0

Status:  OK

CheckDir: tigre.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/tigre.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'tigre/DESCRIPTION' ... OK
* this is package 'tigre' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'tigre' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'tigre' ...
** libs
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c miscCFunctions.c -o miscCFunctions.o
gcc -shared -s -static-libgcc -o tigre.dll tmp.def miscCFunctions.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/tigre.Rcheck/tigre/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'tigre.Rnw' 
   'tigre_quick.Rnw' 
** testing if installed package can be loaded

* DONE (tigre)

name	user	system	elapsed
ExpressionTimeSeries-class	0	0	0
GPLearn	2.26	0.02	2.88
GPModel-class	0	0	0
GPPlot	0	0	0
GPRankTargets	0	0	0
SCGoptim	0	0	0
expTransform	0	0	0
export	0	0	0
generateModels	0	0	0
gpsimCreate	0	0	0
kernCompute	0	0	0
kernCreate	0	0	0
kernDiagGradX	0	0	0
kernGradient	0	0	0
lnDiffErfs	0	0	0
modelDisplay	0.28	0.00	0.28
modelExpandParam	0	0	0
modelExtractParam	0.3	0.0	0.3
modelGradient	0.39	0.02	0.44
modelTieParam	0	0	0
optimiDefaultConstraint	0	0	0
plotTimeseries	0.24	0.02	0.26
processData	0.44	0.01	0.47
scoreList-class	0	0	0
tigre-package	0	0	0